DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17829 and CTCF

DIOPT Version :9

Sequence 1:NP_652054.1 Gene:CG17829 / 47718 FlyBaseID:FBgn0025635 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_006556.1 Gene:CTCF / 10664 HGNCID:13723 Length:727 Species:Homo sapiens


Alignment Length:290 Identity:75/290 - (25%)
Similarity:126/290 - (43%) Gaps:53/290 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 LLQGKLECDLHP---EIPACTAPARLMEKLPALGQNFRCGWTDCEREF-VSIVEFQDHIVKHALF 160
            |.||:|.....|   :.|....||:..:|.    :..:..:|:..::. ||:.:|::...:..|.
Human   178 LEQGELPPQEDPSWQKDPDYQPPAKKTKKT----KKSKLRYTEEGKDVDVSVYDFEEEQQEGLLS 238

  Fly   161 EYDIQKTPEDERP-----------KTMCNWAMCHKHMGNKYRLIEHISTHSNKKQVACFHCGELF 214
            |.:.:|...:.:|           |......:|......:..|..|:.:|::::...|..||..|
Human   239 EVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAF 303

  Fly   215 RTKTTLFDHLRRQPENNTNSFQCAQCFKFFATKKLLKSHVVRHVNCYKCTMCDMTCSSASSLTTH 279
            ||.|.|.:||      ||::          .|:.            :||..|||...::..|..|
Human   304 RTVTLLRNHL------NTHT----------GTRP------------HKCPDCDMAFVTSGELVRH 340

  Fly   280 IRYRHLKDKPLKCSECDTRCVRESDLAKHVQIVHSKTVHQCEHPDCHYSVRTYTQMRRHFLEVHG 344
            .||:|..:||.|||.||...|..|.|.:|::....:...||..  |.|:.|...:::||.....|
Human   341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSL--CSYASRDTYKLKRHMRTHSG 403

  Fly   345 NNPILYACHCCE-RFFKSGKSLSAHLMKKH 373
            ..|  |.|:.|. ||.:|| ::..|:::||
Human   404 EKP--YECYICHARFTQSG-TMKMHILQKH 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17829NP_652054.1 C2H2 Zn finger 182..199 CDD:275368 3/16 (19%)
C2H2 Zn finger 207..225 CDD:275368 9/17 (53%)
C2H2 Zn finger 237..257 CDD:275368 1/19 (5%)
C2H2 Zn finger 263..284 CDD:275368 8/20 (40%)
C2H2 Zn finger 292..311 CDD:275368 8/18 (44%)
C2H2 Zn finger 352..373 CDD:275368 7/21 (33%)
CTCFNP_006556.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..211 8/34 (24%)
zf-H2C2_5 266..289 CDD:404746 3/22 (14%)
C2H2 Zn finger 268..288 CDD:275368 3/19 (16%)
zf-H2C2_2 280..305 CDD:404364 7/24 (29%)
C2H2 Zn finger 296..316 CDD:275368 11/25 (44%)
zf-H2C2_2 309..333 CDD:404364 11/51 (22%)
C2H2 Zn finger 324..347 CDD:275368 9/22 (41%)
zf-H2C2_5 351..375 CDD:404746 9/23 (39%)
C2H2 Zn finger 353..373 CDD:275368 8/19 (42%)
COG5048 <366..500 CDD:227381 21/70 (30%)
C2H2 Zn finger 381..401 CDD:275368 6/21 (29%)
C2H2 Zn finger 409..426 CDD:275368 6/17 (35%)
C2H2 Zn finger 439..457 CDD:275368
C2H2 Zn finger 469..489 CDD:275368
C2H2 Zn finger 497..517 CDD:275368
zf-H2C2_2 509..534 CDD:404364
C2H2 Zn finger 525..546 CDD:275368
C2H2 Zn finger 557..573 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 573..677
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..717
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.