DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17829 and Hinfp

DIOPT Version :9

Sequence 1:NP_652054.1 Gene:CG17829 / 47718 FlyBaseID:FBgn0025635 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_011240678.1 Gene:Hinfp / 102423 MGIID:2429620 Length:519 Species:Mus musculus


Alignment Length:486 Identity:163/486 - (33%)
Similarity:239/486 - (49%) Gaps:64/486 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VPAPQPPGKRKKPAELELTCGWRDCQEICTGEWSLNGHIGDHLE---HYAKAQDDRGAHAEHTEH 69
            |.|..||||..:...|.|.|.|..|..:|:.......|:..||:   |.:|.:::.....|  |.
Mouse     5 VKAMSPPGKVPRKENLGLQCEWGSCSFVCSAMEEFFDHVTQHLQQHMHGSKEEEEEDPLEE--EF 67

  Fly    70 QCTWNSCDF-RTENQVEFERHSYYHGYYLNLLLQG----KLECDLHPEIPACTAPARLMEKLPAL 129
            .|.|..|.| ..::..:..||.|:|.|:..|...|    :.:.||.|    |....:....:|..
Mouse    68 SCLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLSP----CILDFQSRNVIPDT 128

  Fly   130 GQNFRCGWTDCERE---------FVSIVEFQDHIVKHAL-FEYDIQKTPEDERPKTMCNWAMCHK 184
            ..:|.|.|..||..         |.:...|..|:..|:| .||  |...:|.. ...|.|..|..
Mouse   129 PDHFLCLWEHCESSPQVAPAQSVFDNPEWFYRHVDAHSLCCEY--QAVSKDNH-VVQCGWKGCTC 190

  Fly   185 HMGNKYRLIEHISTHSNKKQVACFHCGELFRTKTTLFDHLRRQPENNTNSFQCAQCFKFFATKKL 249
            ...::.:|.||:.:|:.:|.|||..||.:|...|...||:|||...:...|||:.|.|.|||::|
Mouse   191 TFKDRCKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQRFQCSHCSKRFATERL 255

  Fly   250 LKSHVVRHVNCYKCTMCDMTCSSASSLTTHIRYRHLKDKPLKCSECDTRCVRESDLAKHVQIVHS 314
            |:.|:..|||.|||.:|||||...|||..|:|:||.:|:|.||..||..|....||.||:. .||
Mouse   256 LRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPYKCDCCDYSCKNLIDLRKHLD-THS 319

  Fly   315 K-TVHQCEHPDCHYSVRTYTQMRRHFLEVH-GNNPILYACHCCERFFKSGKSLSAHLMKKHGFRL 377
            | :.::|:..:|::|.|:.:.::.|..:|| |::...|.||.|::.|..|.:|:.||.|||.|:.
Mouse   320 KESAYRCDFENCNFSARSLSSVKSHHRKVHEGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKW 384

  Fly   378 PSGHKRFTYRVDENGFYRLETTRLESLEVTQQILSPQVNDSLAKPGTGSCYEIVDPTNTEFERII 442
            ||||.||.|:..|:|:.||:..|.||:|:|||:|                           :::.
Mouse   385 PSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLL---------------------------QQLQ 422

  Fly   443 VSNDP----NEAQLMG---EVVISLPSLAEE 466
            ..:||    ||:.|.|   |.|:..|...||
Mouse   423 EGSDPGLALNESSLQGIVLETVLGGPGPEEE 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17829NP_652054.1 C2H2 Zn finger 182..199 CDD:275368 4/16 (25%)
C2H2 Zn finger 207..225 CDD:275368 7/17 (41%)
C2H2 Zn finger 237..257 CDD:275368 9/19 (47%)
C2H2 Zn finger 263..284 CDD:275368 11/20 (55%)
C2H2 Zn finger 292..311 CDD:275368 8/18 (44%)
C2H2 Zn finger 352..373 CDD:275368 9/20 (45%)
HinfpXP_011240678.1 C2H2 Zn finger 186..205 CDD:275368 4/18 (22%)
C2H2 Zn finger 213..235 CDD:275368 10/21 (48%)
COG5048 <240..393 CDD:227381 70/153 (46%)
C2H2 Zn finger 243..263 CDD:275368 9/19 (47%)
C2H2 Zn finger 269..290 CDD:275368 11/20 (55%)
C2H2 Zn finger 298..318 CDD:275368 8/20 (40%)
C2H2 Zn finger 326..349 CDD:275368 5/22 (23%)
C2H2 Zn finger 359..377 CDD:275368 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6483
eggNOG 1 0.900 - - E1_KOG3608
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9174
Inparanoid 1 1.050 284 1.000 Inparanoid score I2847
Isobase 1 0.950 - 0 Normalized mean entropy S3785
OMA 1 1.010 - - QHG48157
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005624
OrthoInspector 1 1.000 - - oto93125
orthoMCL 1 0.900 - - OOG6_107351
Panther 1 1.100 - - O PTHR24391
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5014
SonicParanoid 1 1.000 - - X96
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.850

Return to query results.
Submit another query.