DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aPKC and RSH3

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_173094.4 Gene:RSH3 / 838214 AraportID:AT1G16440 Length:499 Species:Arabidopsis thaliana


Alignment Length:511 Identity:137/511 - (26%)
Similarity:221/511 - (43%) Gaps:131/511 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   527 KCIQCKLLVHKKCHKLVQKHCTDQPEPLVKERAEESSDPIPVPLPPLPYEAMSGGAEACETHDHA 591
            ||.|      :|..|..||. .:|....::|...:|...:.:....:...:.|..:|:..|::.:
plant    28 KCQQ------QKPRKDKQKQ-VEQNTKKIEEHQIKSESTLLISNHNVNMSSQSNNSESTSTNNSS 85

  Fly   592 HIVAPPPPEDPLEPGTQR------------QYSLNDFELIRVIGRGSYAKVLMVELR--RTRRIY 642
                     .|...|..|            :..::||.:::.:|.|....|.:|||:  .....:
plant    86 ---------KPHTGGDIRWDAVNSLKSRGIKLGISDFRVLKRLGYGDIGSVYLVELKGANPTTYF 141

  Fly   643 AMKVIKKALVTDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQ 707
            ||||:.||.:.....:...|||:.:. :..:||||..|:|.|:|......|:||..||:|....|
plant   142 AMKVMDKASLVSRNKLLRAQTEREIL-SQLDHPFLPTLYSHFETDKFYCLVMEFCSGGNLYSLRQ 205

  Fly   708 RQ--RRLPEEHARFYAAEISLALNFLHEKGIIYRDLKLDNVLLDHEGHIKLTDYGM---CK---- 763
            :|  :...|:.|||:|:|:.|||.:||..||:|||||.:|||:..:|||.|:|:.:   |.    
plant   206 KQPNKCFTEDAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVNPT 270

  Fly   764 --EGIRPGDTTS----------------------------------------------------T 774
              :....|.||.                                                    :
plant   271 LVKSFNGGGTTGIIDDNAAVQGCYQPSAFFPRMLQSSKKNRKSKSDFDGSLPELMAEPTNVKSMS 335

  Fly   775 FCGTPNYIAPEILRGEDYGFSVDWWALGVLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEK 839
            |.||..|:||||::.|.:|.:||||..|:.:||:|.|.:||        ..|..:..|:.|| .:
plant   336 FVGTHEYLAPEIIKNEGHGSAVDWWTFGIFIYELLHGATPF--------KGQGNKATLYNVI-GQ 391

  Fly   840 TIRIPR--SLSVRAASVLKGFLNKNPADRLGCHRESAFMDIVSHPFFKNMDWELLERKQVTPPFK 902
            .:|.|.  .:|..|..::||.|.|.|.:|:...|.:.  :|..||||:.::|.|:..:  |||..
plant   392 PLRFPEYSQVSSTAKDLIKGLLVKEPQNRIAYKRGAT--EIKQHPFFEGVNWALIRGE--TPPHL 452

  Fly   903 PR-LDSD----RDLANFPPEFT-------GEAVQLTPDDDHVIDNIDQSEFEGFEY 946
            |. :|..    ::..:.||..|       .||.:...|.|:::          |||
plant   453 PEPVDFSCYVKKEKESLPPAATEKKSKMFDEANKSGSDPDYIV----------FEY 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 7/22 (32%)
S_TKc 616..884 CDD:214567 101/334 (30%)
STKc_aPKC 620..947 CDD:270740 119/406 (29%)
RSH3NP_173094.4 STKc_phototropin_like 111..457 CDD:270726 110/359 (31%)
S_TKc 113..436 CDD:214567 101/334 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 206 1.000 Inparanoid score I1276
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.050

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