DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aPKC and Pdk1

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_001261183.1 Gene:Pdk1 / 38017 FlyBaseID:FBgn0020386 Length:836 Species:Drosophila melanogaster


Alignment Length:645 Identity:145/645 - (22%)
Similarity:242/645 - (37%) Gaps:176/645 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 LNGCGGGSIAGGSIGGRSSVLGTIHNGHGHHHQQYHHECIHYERLPIPVPIPTVPMGVAPSSQQM 444
            |.|.|...||..::...:|..|...:.:|..|||:.:                :....|.|:.:.
  Fly    32 LPGSGASGIAAAAVITVASDCGENCSSNGTEHQQHFN----------------IATTTATSATEA 80

  Fly   445 SQHQLQSEEEIEPAYATV------FPNV----------------PQAPGLSCDGEDRSIYRRGAR 487
            :...:..|:    |.|||      |.::                .|.....|.....:.....:|
  Fly    81 TMPAMAKEK----ASATVSLGESNFRDINLKDLAVVVEAASRLHHQQNVCGCGAVSSTENNNNSR 141

  Fly   488 RWRKLYRVNGHIFQ-----AKRFNRRAFCAYC-----------QDRIWGLGRQGFKCIQCKLLVH 536
            .....|..|||...     |...:..|...:|           |:.|    ||..:.:......|
  Fly   142 YGSSKYLTNGHTSPLAAAVASNSSSVATTPHCRMLHNCSLQQYQNDI----RQQTEILDMLRQQH 202

  Fly   537 KKCHKLVQKHCTDQPEPLVKERAEESSDPIPVPLPPLPYEAMSGGAEACETHDHAHIVAPPPPED 601
            ::.::..|:    |.:|..::..::..:                     ::.....:..|.|...
  Fly   203 QQGYQSQQQ----QQQPQQQQEQQQQQE---------------------QSQQQQQLQNPAPRRS 242

  Fly   602 PLEPGTQRQYSLNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKH 666
            |           |||...|.||.|||:.|.:.....:||.||:||.:|.|:..:...|:::.|:.
  Fly   243 P-----------NDFIFGRYIGEGSYSIVYLAVDIHSRREYAIKVCEKRLILRERKQDYIKRERE 296

  Fly   667 VFETASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFL 731
            |....:|.|..|.|...||....|:||:.:.|.||::.::.|.........|.||||:.||...:
  Fly   297 VMHQMTNVPGFVNLSCTFQDQRSLYFVMTYARKGDMLPYINRVGSFDVACTRHYAAELLLACEHM 361

  Fly   732 HEKGIIYRDLKLDNVLLDHEGHIKLTDYGMCK--------------------------------- 763
            |.:.:::||||.:|:|||.:.|..:.|:|..|                                 
  Fly   362 HRRNVVHRDLKPENILLDEDMHTLIADFGSAKVMTAHERALATEHCSEQRRSNSDEDDEDSDRLE 426

  Fly   764 -----------EGIRPGD---------------------TTSTFCGTPNYIAPEILRGEDYGFSV 796
                       |.:..||                     ..::|.||..|::||:|:......:.
  Fly   427 NEDEDFYDRDSEELDDGDDEQQQEEMDSPRHRQRRYNRHRKASFVGTAQYVSPEVLQNGPITPAA 491

  Fly   797 DWWALGVLLYEMLAGRSPFDLAGASENPDQNTEDY-LFQVILEKTIRIPRSLSVRAASVLKGFLN 860
            |.||||.::|:|:||..||          :.:.|| :|:.||:..:..|:.....|..:::..|.
  Fly   492 DLWALGCIVYQMIAGLPPF----------RGSNDYVIFKEILDCAVDFPQGFDKDAEDLVRKLLR 546

  Fly   861 KNPADRLGCHRESAFMD-IVSHPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFT 919
            .:|.||||...|..:.: |.:||||..:||:.| |:|..||..|.|.......:|...:|
  Fly   547 VDPRDRLGAQDEFGYYESIRAHPFFAGIDWQTL-RQQTPPPIYPYLPGVSQDEDFRSSYT 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 10/67 (15%)
S_TKc 616..884 CDD:214567 90/334 (27%)
STKc_aPKC 620..947 CDD:270740 102/367 (28%)
Pdk1NP_001261183.1 STKc_PDK1 244..571 CDD:270733 92/336 (27%)
S_TKc 246..571 CDD:214567 90/334 (27%)
PH_PDK1 658..764 CDD:241293
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24356
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.