DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aPKC and prkcda

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_999873.1 Gene:prkcda / 334571 ZFINID:ZDB-GENE-030131-6503 Length:684 Species:Danio rerio


Alignment Length:594 Identity:204/594 - (34%)
Similarity:292/594 - (49%) Gaps:127/594 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 QHQLQSEEEIEPAYATVFPNVPQAPGLSCDGEDRSIYRRGARRWRKLYRVNGHIFQAKRFNRRAF 510
            :|.:.:.|||              |.|:        .||||.:..|::.:..|.|.|..|.:..|
Zfish   130 RHSVVANEEI--------------PTLN--------RRRGAIKQAKIHFIKNHEFIATFFRQPTF 172

  Fly   511 CAYCQDRIWGLGRQGFKCIQCKLLVHKKCHKLVQKHCT------------------DQPE----- 552
            |:.|:|.:|||.:||:||.||...:||||...:...||                  |.|.     
Zfish   173 CSVCRDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSRDTMFQKERFKIDMPHRFKTN 237

  Fly   553 ----------------PLVKE-------------------------------------------- 557
                            .|||:                                            
Zfish   238 NYMSPTFCDHCGSLLWGLVKQGLKCEDCSMNVHHKCQTKVANLCGINQKLLAEALTQVSTKSSTK 302

  Fly   558 RAEESSDPIPVPLPPLPYEAM--SGGAEACETHDHAHIVAPPPPEDPLEPGTQRQYSLNDFELIR 620
            |.:.::..:.|      |:..  |.|.:..:...:.||.....|..|.....|.:.:...|...:
Zfish   303 RPDNNTQDVGV------YQDFNKSPGPDVTDGTPYGHIWEGSSPRPPSRITHQTRITAEHFIFHK 361

  Fly   621 VIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQ 685
            |:|:||:.|||:.||:.|...:|:|.:||.:|..|:|::....||.|...|.::|||..|:|.||
Zfish   362 VLGKGSFGKVLLAELKGTGEWFAVKALKKDVVLMDDDVECTMVEKRVLALAWDNPFLTHLYSTFQ 426

  Fly   686 TPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFLHEKGIIYRDLKLDNVLLDH 750
            |...||||:|::.|||||:|:|.:.|.....|.||||||...|.|||.|||||||||||||:||.
Zfish   427 TKEHLFFVMEYLNGGDLMFHIQEKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDG 491

  Fly   751 EGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLLYEMLAGRSPF 815
            :||||:.|:|||||.:...:..:||||||:|||||||.|:.|.||||||:.|||:||||.|:|||
Zfish   492 DGHIKIADFGMCKENVFGDNRATTFCGTPDYIAPEILLGQQYSFSVDWWSFGVLVYEMLIGQSPF 556

  Fly   816 DLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVLKGFLNKNPADRLGCHRESAFMDIVS 880
                     ..:.||.||:.|...|...||.:.:....:|:....::|:.|||     ...:|..
Zfish   557 ---------HGDDEDELFESIRMDTPHYPRWILLDTRDMLERLFERDPSRRLG-----IVGNIRG 607

  Fly   881 HPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFTGEAVQLTPDDDHVIDNIDQSEFEGFE 945
            |.|||.::|..||.::|.|||||::.:..|.:||..||..|..:|:..:..:||::||..|.||.
Zfish   608 HSFFKTVNWAALEGREVDPPFKPKVKAPNDCSNFDREFLSEKPRLSHCEKGLIDSMDQCAFAGFS 672

  Fly   946 YVNPLLMSL 954
            ::||.:..|
Zfish   673 FINPKMEHL 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 23/69 (33%)
S_TKc 616..884 CDD:214567 126/267 (47%)
STKc_aPKC 620..947 CDD:270740 151/326 (46%)
prkcdaNP_999873.1 C1_1 160..209 CDD:278556 21/48 (44%)
C1_1 232..284 CDD:278556 3/51 (6%)
S_TKc 357..611 CDD:214567 126/267 (47%)
STKc_nPKC_delta 361..676 CDD:173710 151/328 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222529at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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