DRSC/TRiP Functional Genomics Resources

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Protein Alignment aPKC and Pkn1

DIOPT Version :10

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:XP_006255307.1 Gene:Pkn1 / 29355 RGDID:69308 Length:951 Species:Rattus norvegicus


Alignment Length:402 Identity:159/402 - (39%)
Similarity:228/402 - (56%) Gaps:34/402 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   559 AEESSDPIPVPLPPLPYEAMSGGAEAC--ETHDHAHIVAPPPPEDPLE---PG-----TQRQYSL 613
            ::.||...|..||          :.:|  .:..|....:|..|.:..|   ||     .:...:|
  Rat   567 SDSSSQKSPAGLP----------STSCSLSSPTHESTTSPELPSETQETPGPGLCSPLRKSPLTL 621

  Fly   614 NDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKHVFETA--SNHPF 676
            .||:.:.|:|||.:.|||:.|...:..::|:|.:||..:...::::.:..||.:..|.  :.|||
  Rat   622 EDFKFLAVLGRGHFGKVLLSEFHSSGELFAIKALKKGDIVARDEVESLMCEKRILATVTRAGHPF 686

  Fly   677 LVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFLHEKGIIYRDL 741
            ||.|..|||||..:.||:|:..|||||.|:... ...|..|.||:|.:.|.|.||||..|:||||
  Rat   687 LVNLFGCFQTPEHVCFVMEYSAGGDLMLHIHSD-VFSEPRAVFYSACVVLGLQFLHEHKIVYRDL 750

  Fly   742 KLDNVLLDHEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLLY 806
            ||||:|||.||::|:.|:|:||||:..||.||||||||.::|||:|....|..:||||.||||||
  Rat   751 KLDNLLLDTEGYVKIADFGLCKEGMGYGDRTSTFCGTPEFLAPEVLTDTSYTRAVDWWGLGVLLY 815

  Fly   807 EMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVLKGFLNKNPADRLGCHR 871
            |||.|.|||        |..:.|: :|..|:...:|.||.||..|..:::..|.:||..|||...
  Rat   816 EMLVGESPF--------PGDDEEE-VFDSIVNDEVRYPRFLSAEAIGIMRRLLRRNPERRLGSTE 871

  Fly   872 ESAFMDIVSHPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFTGEAVQLTPD-DDHVIDN 935
            ..| .|:...|||:.:||:.|..:::.|||.|.|....|::||..||||||..|:|. |...:..
  Rat   872 RDA-EDVKKQPFFRTLDWDALLARRLPPPFVPTLSGRTDVSNFDEEFTGEAPTLSPPRDARPLTA 935

  Fly   936 IDQSEFEGFEYV 947
            .:|:.|..|::|
  Rat   936 AEQAAFRDFDFV 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_aPKC 496..550 CDD:410344
STKc_aPKC 620..947 CDD:270740 143/329 (43%)
Pkn1XP_006255307.1 HR1_PKN_1 37..103 CDD:212012
HR1_PKN1_2 126..197 CDD:212020
HR1 214..286 CDD:469609
C2_PKN-like 397..484 CDD:176069
STKc_PKN 624..948 CDD:270741 145/335 (43%)
Blue background indicates that the domain is not in the aligned region.

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