DRSC/TRiP Functional Genomics Resources

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Protein Alignment aPKC and Prkca

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:XP_038941139.1 Gene:Prkca / 24680 RGDID:3395 Length:722 Species:Rattus norvegicus


Alignment Length:701 Identity:231/701 - (32%)
Similarity:302/701 - (43%) Gaps:245/701 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 RRGARRWRKLYRVNGHIFQAKRFNRRAFCAYCQDRIWGLGRQGFKCIQCKLLVHKKCHKLVQKHC 547
            |:||.|.:.::.|..|.|.|:.|.:..||::|.|.|||.|:|||:|..|..:|||:||:.|...|
  Rat    22 RKGALRQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSC 86

  Fly   548 --------TDQPEP--------------------------------------------------- 553
                    ||.|..                                                   
  Rat    87 PGADKGPDTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLC 151

  Fly   554 ------------LVKERAEES-------------------SDP------IPVP------------ 569
                        |..|..:|.                   |||      ||.|            
  Rat   152 GMDHTEKRGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR 216

  Fly   570 ----------------------------------------------------LP----------- 571
                                                                :|           
  Rat   217 STLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQE 281

  Fly   572 -------PLPYEAMSGGAEACETHDHAHIVAP------PPPEDPLEPGTQ-RQYSLNDFELIRVI 622
                   |:|.....|..|..:..:.|.: .|      .|.||..:|... .:..|.||..:.|:
  Rat   282 EGEYYNVPIPEGDEEGNVELRQKFEKAKL-GPAGNKVISPSEDRKQPSNNLDRVKLTDFNFLMVL 345

  Fly   623 GRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTP 687
            |:||:.||::.:.:.|..:||:|::||.:|..|:|::....||.|.......|||..|||||||.
  Rat   346 GKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPPFLTQLHSCFQTV 410

  Fly   688 SRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFLHEKGIIYRDLKLDNVLLDHEG 752
            .||:||:|:|.|||||||:|:..:..|..|.|||||||:.|.|||::||||||||||||:||.||
  Rat   411 DRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVMLDSEG 475

  Fly   753 HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLLYEMLAGRSPFDL 817
            |||:.|:|||||.:..|.||.||||||:||||||:..:.||.||||||.||||||||||:.||  
  Rat   476 HIKIADFGMCKEHMMDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPF-- 538

  Fly   818 AGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVLKGFLNKNPADRLGCHRESAFMDIVSHP 882
                   |...||.|||.|:|..:..|:|||..|.|:.||.:.|:||.||||..|.. .|:..|.
  Rat   539 -------DGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGE-RDVREHA 595

  Fly   883 FFKNMDWELLERKQVTPPFKPRLDSDRDL------------------------------------ 911
            ||:.:|||.||.:::.|||||::....::                                    
  Rat   596 FFRRIDWEKLENREIQPPFKPKVQCTAEVRGFTAFSTQLFLILDISNSSPLSVLILQNFCTKMHW 660

  Fly   912 -------------ANFPPEFTGEAVQLTPDDDHVIDNIDQSEFEGFEYVNP 949
                         .||...||.....|||.|..||.|||||:||||.||||
  Rat   661 LQWASRPSCGKGAENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 25/59 (42%)
S_TKc 616..884 CDD:214567 142/267 (53%)
STKc_aPKC 620..947 CDD:270740 172/375 (46%)
PrkcaXP_038941139.1 C1_cPKC_rpt1 35..92 CDD:410383 24/56 (43%)
C1_cPKC_rpt2 102..155 CDD:410386 0/52 (0%)
C2_PKC_alpha_gamma 159..289 CDD:175992 10/129 (8%)
PKc_like 328..718 CDD:419665 179/394 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D143719at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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