DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aPKC and pkc-1

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_001256396.1 Gene:pkc-1 / 179649 WormBaseID:WBGene00004032 Length:763 Species:Caenorhabditis elegans


Alignment Length:564 Identity:224/564 - (39%)
Similarity:307/564 - (54%) Gaps:106/564 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 DRSIYRRGARRWRKLYRVNGHIFQAKRFNRRAFCAYCQDRIWGLGRQGFKCIQCKLLVHKKCHKL 542
            ||.  ||||.| ||::.|.||.|.|....:..|||:|::.|||:|:||::|..|.::|||:||:.
 Worm   210 DRQ--RRGAMR-RKIHEVTGHKFMALFLRQPTFCAHCKEFIWGIGKQGYQCQICTVVVHKRCHED 271

  Fly   543 VQKHC----TDQPEPLVKERAEESSDPIPVPLP------------------PLPYEAMSGGAEA- 584
            |...|    .|..|.|.||..|..:....:.:|                  .:.|..::.|.:. 
 Worm   272 VVWKCPGNKADAVEELGKEIQETGAGRFNINMPHRFSVHSYKRPTFCDHCGSMLYGLINQGLQCS 336

  Fly   585 ---------CE-----------------------THDHAHIVAPPPP------------------ 599
                     |:                       |.|...|.:...|                  
 Worm   337 TCKLNVHKRCQRNVANNCGINAKQMAAELAQLGLTGDKMSIRSKKKPSIMTDTSTDISGSSNSEN 401

  Fly   600 --------EDPLEPGTQRQ----------YSLNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKV 646
                    ||  :.||...          .|::||..::|:|:||:.||::.|.:.|..:||:|:
 Worm   402 SGYLQQISED--DSGTTSSRSASKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVYAIKI 464

  Fly   647 IKKALVTDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRR 711
            :||.::..|:|::....||.:...|:.||||..|||.|||..|||||:|:|.|||||:.:||.|:
 Worm   465 LKKDVIVQDDDVECTMCEKRILSLAAKHPFLTALHSSFQTSDRLFFVMEYVNGGDLMFQIQRARK 529

  Fly   712 LPEEHARFYAAEISLALNFLHEKGIIYRDLKLDNVLLDHEGHIKLTDYGMCKEGIRPGDTTSTFC 776
            ..|..|||||||::.||.|||...:|||||||||:|||.|||.:|.|:|||||||...:.|||||
 Worm   530 FDESRARFYAAEVTCALQFLHRNDVIYRDLKLDNILLDAEGHCRLADFGMCKEGINKDNLTSTFC 594

  Fly   777 GTPNYIAPEILRGEDYGFSVDWWALGVLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTI 841
            |||:|||||||:..:||.||||||||||:|||:||:.||         :.:.||.||:.||...:
 Worm   595 GTPDYIAPEILQEMEYGVSVDWWALGVLMYEMMAGQPPF---------EADNEDDLFEAILNDDV 650

  Fly   842 RIPRSLSVRAASVLKGFLNKNPADRLGCHRESAFMDIV-SHPFFKNMDWELLERKQVTPPFKPRL 905
            ..|..||..|.::||.|:.||...||||.......|.: :||||:.:||:.||.:||.|||||::
 Worm   651 LYPVWLSKEAVNILKAFMTKNAGKRLGCVVSQGGEDAIRAHPFFREIDWDALESRQVKPPFKPKI 715

  Fly   906 DSDRDLANFPPEFTGEAVQLTPDDDHVIDNIDQSEFEGFEYVNP 949
            .|.||..||..:||.|...|||.|..|:..|:|.||.||.::||
 Worm   716 KSKRDANNFDSDFTKEEPVLTPSDPAVVRAINQDEFRGFSFINP 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 22/55 (40%)
S_TKc 616..884 CDD:214567 137/268 (51%)
STKc_aPKC 620..947 CDD:270740 168/327 (51%)
pkc-1NP_001256396.1 C2_PKC_epsilon 59..188 CDD:175981
C1_1 227..279 CDD:278556 22/51 (43%)
C1_1 305..357 CDD:278556 3/51 (6%)
S_TKc 434..694 CDD:214567 137/268 (51%)
STKc_nPKC_epsilon 438..758 CDD:270743 168/328 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222529at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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