DRSC/TRiP Functional Genomics Resources

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Protein Alignment aPKC and Prkcd

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_579841.2 Gene:Prkcd / 170538 RGDID:67383 Length:673 Species:Rattus norvegicus


Alignment Length:614 Identity:223/614 - (36%)
Similarity:315/614 - (51%) Gaps:120/614 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 PIPTVPMGVAPSSQQMSQHQLQSEEEIEPAYATVFPNVPQAPGLSC------DG--------EDR 479
            |:..|.:||:..:::..::..::|..::..        |||..|.|      ||        |:.
  Rat    80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYFLEDGDCKQSMRSEEE 136

  Fly   480 SIY----RRGARRWRKLYRVNGHIFQAKRFNRRAFCAYCQDRIWGLGRQGFKCIQCKLLVHKKCH 540
            :::    ||||.:..|::.:..|.|.|..|.:..||:.|::.:|||.:||:||.||...:||||.
  Rat   137 AMFPTMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKEFVWGLNKQGYKCRQCNAAIHKKCI 201

  Fly   541 KLVQKHCT-----DQPEPLVKERAEESSDPIPVPLPPLPYEAMS-------GG-----------A 582
            ..:...||     .:.....|||..     |.:|.....|..||       |.           .
  Rat   202 DKIIGRCTGTATNSRDTIFQKERFN-----IDMPHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKC 261

  Fly   583 EACETHDH-------AHIV-----------------APPPPEDPLEPGTQRQYS----------- 612
            |.|..:.|       |::.                 |...||.|...|..:.:.           
  Rat   262 EDCGMNVHHKCREKVANLCGINQKLLAEALNQVTQKASRKPETPETVGIYQGFEKKTAVSGNDIP 326

  Fly   613 -----------------LNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDW 660
                             |.:|...:|:|:||:.|||:.||:...|.:|:|.:||.:|..|:|::.
  Rat   327 DNNGTYGKIWEGSNRCRLENFTFQKVLGKGSFGKVLLAELKGKERYFAIKYLKKDVVLIDDDVEC 391

  Fly   661 VQTEKHVFETASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEIS 725
            ...||.|...|..:|||..|...|||...||||:||:.|||||:|:|.:.|.....|.||||||.
  Rat   392 TMVEKRVLALAWENPFLTHLICTFQTKDHLFFVMEFLNGGDLMFHIQDKGRFELYRATFYAAEII 456

  Fly   726 LALNFLHEKGIIYRDLKLDNVLLDHEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGE 790
            ..|.|||.|||||||||||||:||.:||||:.|:|||||.|...:..|||||||:|||||||:|.
  Rat   457 CGLQFLHGKGIIYRDLKLDNVMLDKDGHIKIADFGMCKENIFGENRASTFCGTPDYIAPEILQGL 521

  Fly   791 DYGFSVDWWALGVLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVL 855
            .|.||||||:.||||||||.|:|||         ..:.||.||:.|...|...||.::..:..::
  Rat   522 KYSFSVDWWSFGVLLYEMLIGQSPF---------HGDDEDELFESIRVDTPHYPRWITKESKDIM 577

  Fly   856 KGFLNKNPADRLGCHRESAFMDIVSHPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFTG 920
            :....::||.|||     ...:|..|||||.::|.|||:::|.|||||::.|..|.:||.|||..
  Rat   578 EKLFERDPAKRLG-----VTGNIRLHPFFKTINWNLLEKRKVEPPFKPKVKSPSDYSNFDPEFLN 637

  Fly   921 EAVQLTPDDDHVIDNIDQSEFEGFEYVNP 949
            |..||:..|.::||::||:.|:||.:|||
  Rat   638 EKPQLSFSDKNLIDSMDQTAFKGFSFVNP 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 22/56 (39%)
S_TKc 616..884 CDD:214567 130/267 (49%)
STKc_aPKC 620..947 CDD:270740 160/326 (49%)
PrkcdNP_579841.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222529at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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