DRSC/TRiP Functional Genomics Resources

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Protein Alignment aPKC and prkch

DIOPT Version :10

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:XP_002939521.2 Gene:prkch / 100151731 XenbaseID:XB-GENE-486685 Length:691 Species:Xenopus tropicalis


Alignment Length:543 Identity:220/543 - (40%)
Similarity:309/543 - (56%) Gaps:91/543 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 RRGARRWRKLYRVNGHIFQAKRFNRRAFCAYCQDRIWGL-GRQGFKCIQCKLLVHKKCHKLVQKH 546
            |:.|.| |::::||||.|.|....:..:|::|:|.|||: |:||::|..|..:|||:||:|:...
 Frog   157 RQRAMR-RRVHQVNGHKFMATYLKQPTYCSHCKDFIWGVFGKQGYQCQVCTCVVHKRCHQLIVTA 220

  Fly   547 CT-DQPEPLVKERAEESSDPIPVP---------LP------------------------------ 571
            || ......|:::..|....|.:|         :|                              
 Frog   221 CTCKSTTSKVEKQIFEQRFGINLPHKFRYHNYKVPTFCDHCGSLLWGLVKQGLQCKICKMNVHKR 285

  Fly   572 ------------------------------PLPYEAMSGGAEACETHDHAHIVAPPPPEDPL-EP 605
                                          |....::||..::    |..|:     .||.: ..
 Frog   286 CEANVAHNCGVNSVDLANALAGMGLHPGNIPFKQHSVSGSVDS----DSNHL-----EEDSISNT 341

  Fly   606 GTQRQYSLNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKHVFET 670
            .:|.::.::||..:||:|:||:.||::.:.:.:..:||:||:||.::..|:|::...|||.:...
 Frog   342 SSQYKFGIDDFTFLRVLGKGSFGKVMLAKSKESDSLYAVKVLKKDVILQDDDVECTMTEKRILSL 406

  Fly   671 ASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFLHEKG 735
            |.|||||..|..||||..|||||:|||.|||||:|:|:.||..|..|.||:|||:.||.|||:||
 Frog   407 ACNHPFLTQLFCCFQTLDRLFFVMEFVNGGDLMFHIQKSRRFDEARACFYSAEITSALMFLHDKG 471

  Fly   736 IIYRDLKLDNVLLDHEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 800
            :|||||||||||||||||.||.|:||||||||.|.|||||||||:|||||||:...||..|||||
 Frog   472 VIYRDLKLDNVLLDHEGHCKLADFGMCKEGIREGCTTSTFCGTPDYIAPEILQEMQYGPLVDWWA 536

  Fly   801 LGVLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVLKGFLNKNPAD 865
            :||||||||.|.:||:    :||     ||.||:.||...:..|..||..|..:|:.|:.|.||.
 Frog   537 MGVLLYEMLCGHAPFE----AEN-----EDDLFEAILNDEVVYPGWLSQDAVEILQAFMKKKPAK 592

  Fly   866 RLGCHRESAFMDIVSHPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFTGEAVQLTPDDD 930
            |||.........|:.|||||:::|:.|.:|.:.|||:||:.:..|::||.|||..|...|||.|:
 Frog   593 RLGSLSLGGEKAILWHPFFKDINWDELNKKTIEPPFRPRIKAREDVSNFDPEFIKEDAVLTPIDE 657

  Fly   931 HVIDNIDQSEFEGFEYVNPLLMS 953
            .::..|:|.||..|.|..|.|.:
 Frog   658 SLLPLINQEEFRNFSYTAPELQN 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_aPKC 496..550 CDD:410344 24/55 (44%)
STKc_aPKC 620..947 CDD:270740 173/326 (53%)
prkchXP_002939521.2 C2_PKC_epsilon 7..139 CDD:175981
C1_nPKC_epsilon-like_rpt1 165..223 CDD:410385 24/57 (42%)
C1_nPKC_epsilon-like_rpt2 243..297 CDD:410388 2/53 (4%)
STKc_nPKC_eta 356..678 CDD:270742 175/330 (53%)
Blue background indicates that the domain is not in the aligned region.

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