DRSC/TRiP Functional Genomics Resources

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Protein Alignment aPKC and prkce

DIOPT Version :9

Sequence 1:NP_001260984.1 Gene:aPKC / 47594 FlyBaseID:FBgn0261854 Length:958 Species:Drosophila melanogaster
Sequence 2:XP_012818146.1 Gene:prkce / 100135720 XenbaseID:XB-GENE-981655 Length:753 Species:Xenopus tropicalis


Alignment Length:603 Identity:229/603 - (37%)
Similarity:311/603 - (51%) Gaps:151/603 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 RRGARRWRKLYRVNGHIFQAKRFNRRAFCAYCQDRIWG-LGRQGFKCIQCKLLVHKKCHKLVQKH 546
            |:||.| |::::||||.|.|....:..:|::|:|.||| :|:||::|..|..:|||:||:|:...
 Frog   156 RQGAVR-RRVHQVNGHKFMATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITK 219

  Fly   547 CT-----DQPEPL-----------------------------------------------VKERA 559
            |.     :.|:.:                                               |..|.
 Frog   220 CAGLKKQETPDEVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRC 284

  Fly   560 EESSDP--------IPVPLPPL------------------------PYEAMSG--------GAEA 584
            |.:..|        |...|..|                        |.:.::|        |..|
 Frog   285 ESNVAPNCGVDSRGIAKVLADLGVTPDKITAAGQRRKKKRNALIFSPMKLIAGAETQQPVPGGPA 349

  Fly   585 CETHDHAHIVAPPPPED----PLE---------------------PGTQRQYS------------ 612
            .|  |.....||..|.|    .||                     ..|:.|.|            
 Frog   350 VE--DDRSKSAPTSPCDQEIKDLENNIRKALSFDNRGEEHKSTATAATENQLSGTGENGENGEVK 412

  Fly   613 --------LNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALVTDDEDIDWVQTEKHVFE 669
                    |.||..|:|:|:||:.||::.||:....:||:||:||.::..|:|:|...|||.:..
 Frog   413 LHEHKRTGLEDFNFIKVLGKGSFGKVMLAELKGRDEVYAVKVLKKDVILQDDDVDCTMTEKRILA 477

  Fly   670 TASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDLMYHMQRQRRLPEEHARFYAAEISLALNFLHEK 734
            .|..||:|..|:.||||..|||||:|:|.|||||:.:||.|:..|..:||||||::.||.|||:.
 Frog   478 LARRHPYLTQLYCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTSALMFLHQH 542

  Fly   735 GIIYRDLKLDNVLLDHEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWW 799
            |:|||||||||:|||.|||.||.|:|||||||..|.||:||||||:|||||||:..:||.|||||
 Frog   543 GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWW 607

  Fly   800 ALGVLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAASVLKGFLNKNPA 864
            |||||:|||:||:.||         :.:.||.||:.||...:..|..||..|.|:||.|:.|||.
 Frog   608 ALGVLMYEMMAGQPPF---------EADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPN 663

  Fly   865 DRLGCHRESAFMD-IVSHPFFKNMDWELLERKQVTPPFKPRLDSDRDLANFPPEFTGEAVQLTPD 928
            .||||.......: |..|||||.:||.|||:::|.||||||:.:.||:.||..:||.|...||..
 Frog   664 KRLGCVAAQGLEEAIKQHPFFKEIDWVLLEQRKVKPPFKPRIKTKRDVNNFDQDFTREEPVLTLV 728

  Fly   929 DDHVIDNIDQSEFEGFEY 946
            |:.::..|:|.||:||.|
 Frog   729 DEAIVKQINQEEFKGFSY 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aPKCNP_001260984.1 C1_1 498..550 CDD:278556 21/57 (37%)
S_TKc 616..884 CDD:214567 143/268 (53%)
STKc_aPKC 620..947 CDD:270740 173/328 (53%)
prkceXP_012818146.1 C2_PKC_epsilon 3..135 CDD:175981
C1_1 170..220 CDD:365894 20/49 (41%)
C1_1 243..293 CDD:365894 4/49 (8%)
STKc_nPKC_epsilon 428..748 CDD:270743 173/328 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222529at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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