DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and HB53

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_201471.1 Gene:HB53 / 836803 AraportID:AT5G66700 Length:228 Species:Arabidopsis thaliana


Alignment Length:88 Identity:27/88 - (30%)
Similarity:42/88 - (47%) Gaps:6/88 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 GGVAAPAAKK------DGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREEL 337
            ||..:...|:      .|||:..:.|...|.....:...|..|:..||.:|......:...:|::
plant    37 GGEESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKI 101

  Fly   338 AIKLNLSESRVQVWFQNRRAKWR 360
            |.:|.|...:|.||||||||:|:
plant   102 AGELGLDPRQVAVWFQNRRARWK 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 18/48 (38%)
HB53NP_201471.1 Homeodomain 71..125 CDD:459649 19/54 (35%)

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