DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and HB40

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001329011.1 Gene:HB40 / 829827 AraportID:AT4G36740 Length:217 Species:Arabidopsis thaliana


Alignment Length:88 Identity:28/88 - (31%)
Similarity:43/88 - (48%) Gaps:4/88 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 KKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVW 351
            |..||.:...|. ||:.:|:   ..|..|:..||.:|......:...::.||.:|.|...:|.||
plant    40 KTKGSVASADGG-NGLFRKR---KLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVW 100

  Fly   352 FQNRRAKWRKHEPPRKTGYIKTS 374
            ||||||:|:......:...:|.|
plant   101 FQNRRARWKNKRLEEEYNKLKNS 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 18/47 (38%)
HB40NP_001329011.1 HOX 56..109 CDD:197696 19/55 (35%)

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