Protein Alignment repo and Isx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001387929.1
• Gene: Isx / 682968
• RGDID: 1592776
• Length: 242
• Species: Rattus norvegicus
• Alignment Length: 241
• Identity: 63/241 - (26%)
• Similarity: 104/241 - (43%)
• Gaps: 61/241 - (25%)

  Fly   224 LKKPDEMCSQLEAGG------AGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVA 282
            ::|....|...|..|      |.:..|:....:....:.|.|::..::::|..::
  Rat    10 IEKSSGYCEAPEKLGLSFSIEAILKRPTERRNLPRPQSIGGGDSRQTTTSGSKLE---------- 64

  Fly   283 APAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESR 347
              ...:|....::|      .|::.|||||..||:|||:.|....|||:..|.:||.::||.|:|
  Rat    65 --KPTQDQPQEERK------NKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEAR 121

  Fly   348 VQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGT---------------LAPPFTSYPQTT 397
            ||:||||:||||||.|   |:|.:      :|...||:               :.||.:...:..
  Rat   122 VQIWFQNQRAKWRKQE---KSGSL------SAPQQPGSCTDAHCSAHIGATHRMLPPLSDSARFK 177

  Fly   398 TVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVH 443
            .|..|.|         |..:.|    :.|||..:.::......|:|
  Rat   178 LVPCPDS---------PCPMAP----MGPAAPAWPSHPAALCPYLH 210

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	26/47 (55%)
Isx	NP_001387929.1	Homeodomain	79..135	CDD:459649	31/55 (56%)