Protein Alignment repo and Crx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_068627.2
• Gene: Crx / 60446
• RGDID: 620511
• Length: 299
• Species: Rattus norvegicus
• Alignment Length: 237
• Identity: 80/237 - (33%)
• Similarity: 106/237 - (44%)
• Gaps: 67/237 - (28%)

  Fly   303 KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWR------- 360
            |:::.|||||..||||||..|.:..||||:||||:|:|:||.||||||||:|||||.|
  Rat    38 KQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQK 102

  Fly   361 -KHEPP----------RKTGYIKTSTPPTATL--------------NPGTLAPPFTSYPQTTTVT 400
             :.:||          ||.|   ||..|:..:              .||....|.|:. .|.::.
  Rat   103 QQQQPPGVQAKARPAKRKAG---TSPRPSTDVCTDPLGISDSYSPSLPGPSGSPTTAV-ATVSIW 163

  Fly   401 PPGSM---------------DSWTSYQTPYELT--PQFSLL-SPA--ASPYGTYSGQYGAYVHES 445
            .|.|.               .|.||  .||.:|  |..:.. ||:  |||...:||.      :.
  Rat   164 SPASESPLPEAQRAGLVASGSSLTS--APYAMTYAPASAFCSSPSAYASPSSYFSGL------DP 220

  Fly   446 QLFPMRHYEYGSPTRMEM-GATTGSVAGNGDESVANGGSYQT 486
            .|.||.. :.|.|....: |.:.|........|: :|.||.|
  Rat   221 YLSPMVP-QLGGPALSPLSGPSVGPSLAQSPTSL-SGQSYST 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	33/55 (60%)
Crx	NP_068627.2	Homeodomain	40..93	CDD:459649	35/52 (67%)
		TF_Otx	164..249	CDD:427350	23/93 (25%)