DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and alx3

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_005167168.1 Gene:alx3 / 566955 ZFINID:ZDB-GENE-120221-3 Length:364 Species:Danio rerio


Alignment Length:429 Identity:109/429 - (25%)
Similarity:165/429 - (38%) Gaps:132/429 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 ATPP----PSHNGILLHKQSS--QQQQQQQQQLVGILDYHPL-------NGKLDY-----SSSPK 177
            ::||    |.::..|.|..||  |....|:...:.:...|..       .|..|:     |::|:
Zfish    10 SSPPNRITPDNSPGLEHNSSSFFQCDDLQKSPHLALAHRHEFFMGRYADGGSADFTHGVSSTTPR 74

  Fly   178 DQYEPQQLQHLYGGSP-HHLDHLDHGSDGLLQDSSPVMINGGS--------AGGK-LKKP----- 227
                         .|| .|..:|::    :.||..|.:....|        ||.| |.||     
Zfish    75 -------------ASPGKHTKYLEN----INQDQKPSITEKNSSFYETNSDAGDKTLSKPLGYPA 122

  Fly   228 --DEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDG 290
              .|.|.:|:....|:|              |...|:|...:|..                    
Zfish   123 LDSECCGKLKEASNGLT--------------GDSIADSIDLSGKN-------------------- 153

  Fly   291 SSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNR 355
                        ||::.||||:.:||||||:.|::..||||:|||:||::..|:|:|||||||||
Zfish   154 ------------KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTELTEARVQVWFQNR 206

  Fly   356 RAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTP-----Y 415
            ||||||.|...|...::.....|..:   :|.|...:|....::.|.|:..:.....:.     .
Zfish   207 RAKWRKRERYGKMQEVRNHFAATYDI---SLLPRSDTYQMQNSLWPSGAGATGAGGASSACVLGT 268

  Fly   416 ELTPQFSLLSPAASPYGTYSGQYGA--------YVHESQLFPMRH------YE-YGSPTRMEMGA 465
            |..|. |.:||...|:|...|..|.        :.|.....|..|      |. :|.|.  .:||
Zfish   269 ENMPS-SCMSPYPHPHGNLPGLMGMSASPGHHHHHHHHHHHPSHHPSINGIYSLHGFPG--SLGA 330

  Fly   466 TTGSVAGNGDESVANGGSYQTAELQTAQQQQLADGTLVT 504
            .|...   |.||     .|:.:.|...:.:....|:|::
Zfish   331 HTFEA---GPES-----EYKPSGLVALRMKTKDPGSLLS 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 30/46 (65%)
alx3XP_005167168.1 Homeobox 159..211 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.