DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and dmbx1b

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001017625.1 Gene:dmbx1b / 550288 ZFINID:ZDB-GENE-050417-97 Length:369 Species:Danio rerio


Alignment Length:322 Identity:80/322 - (24%)
Similarity:120/322 - (37%) Gaps:96/322 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHE---- 363
            |::::||.|||.|||.||:.|::..||||..||.||:..||.|:||||||:|||||:||.:    
Zfish    65 KQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQ 129

  Fly   364 -----------------------PPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPP--- 402
                                   ||     ::...||:.....|..:.|.....:...||.|   
Zfish   130 KEQLQRLKEAGTEGAQDEGKEEAPP-----VEAQAPPSPLDGRGLTSAPSCELNEEVNVTSPEQS 189

  Fly   403 ----GSMDSWTSYQTPYEL----------------TPQFSLLSP--------------------- 426
                |:.|:......|..:                :|.:..|||                     
Zfish   190 GAESGAEDTTDREDEPLSIKDEIKEAGPPLMTDDSSPSYKPLSPKSDDPLVSPALPSSSGAVAQS 254

  Fly   427 ---AASPYGTYSGQYGAYVHESQLFPMRHY---EYGSPTRME-MGATTGSVAGNGDESVANGGSY 484
               |:||...:..|.....|.:....:.||   :..:|:.:. :|......:..|  |:.....|
Zfish   255 NSYASSPLSLFRLQEQFRQHMAATNNLMHYPAFDVTAPSSLPYLGVNVNMASPLG--SLPCQPYY 317

  Fly   485 QTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSP 546
            ||    ..|.||:....|:      |.......||.|..|.|..: :..:.|.:..||:..|
Zfish   318 QT----LTQAQQMWSSPLL------QGSGGLPALNSKTTSIENLR-LRAKQHAASLGLDTLP 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 29/46 (63%)
dmbx1bNP_001017625.1 Homeobox 69..122 CDD:278475 33/52 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..253 16/133 (12%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 346..359 2/13 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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