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Protein Alignment repo and lhx8
DIOPT Version :9
Sequence 1: | NP_477026.1 |
Gene: | repo / 47285 |
FlyBaseID: | FBgn0011701 |
Length: | 612 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_012816489.1 |
Gene: | lhx8 / 548653 |
XenbaseID: | XB-GENE-494997 |
Length: | 385 |
Species: | Xenopus tropicalis |
Alignment Length: | 190 |
Identity: | 53/190 - (27%) |
Similarity: | 77/190 - (40%) |
Gaps: | 47/190 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 269 VGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFA 333
|.::||..|...:..|. ..|:.||:|||.||:.::..|.:...||...
Frog 236 VSVEGALLTEQDINQPK-----------------PAKRARTSFTADQLQVMQAQFAQDNNPDAQT 283
Fly 334 REELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPP------FTS 392
.::|:.:..||...:||||||.||:.:||..|. .:||.|..|:.|..|:|| :::
Frog 284 LQKLSERTGLSRRVIQVWFQNCRARHKKHVSPN-----HSSTTPVTTVQPSRLSPPMLEEMTYSA 343
Fly 393 YPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRH 452
| |...|.| ||...|.:. |.|| |..|......|.....|:.|
Frog 344 Y-----VPQDGPM-----------LTALHSYMD-AHSP--TALGLQSLLPHSMTQLPISH 384
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R6207 |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.940 |
|
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