Protein Alignment repo and Pdlim3

DIOPT Version :9

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001361581.1
• Gene: Pdlim3 / 53318
• MGIID: 1859274
• Length: 364
• Species: Mus musculus
• Alignment Length: 390
• Identity: 77/390 - (19%)
• Similarity: 118/390 - (30%)
• Gaps: 136/390 - (34%)

  Fly   236 AGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPN 300
            :||.....|    .|:...|.|:..|            ||....|....|....|:.|....|
Mouse    18 SGGIDFNQP----LVITRITPGSKAA------------AANLCPGDVILAIDGFGTESMTHAD-- 64

  Fly   301 GIKKKKTRTTFTAYQL-EELERAFERAPYPDVFAREELA--IKLNLSESRVQV-WFQNRRAKWRK 361
                .:.|....:||| .:::||..|...|.| :.:..|  .|:||......| :|::      |
Mouse    65 ----AQDRIKAASYQLCLKIDRAETRLWSPQV-SEDGKAHPFKINLEAEPQDVNYFEH------K 118

  Fly   362 HE--------PPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTP----------------- 401
            |.        |.|.:|   .|||.......|...|  :|....:|:.|
Mouse   119 HNIRPKPFIIPGRTSG---CSTPSGVDCGSGRSTP--SSVSTVSTICPGDLKVAAKMAPNIPLEM 178

  Fly   402 --PGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMG 464
              ||.......:.||.:|....:::.       |..||....:.|:.               .|.
Mouse   179 ELPGVKIVHAQFNTPMQLYSDDNIME-------TLQGQVATALGETS---------------SMS 221

  Fly   465 ATTGSVA----------GNGDESVA--NGGSYQTAELQTAQQQQLADG-------------TLVT 504
            ..|.||.          .|.|:..|  ..||::..      |..:.||             .:..
Mouse   222 EPTASVPPQSDVYRMLHDNRDDPAAPRQSGSFRVL------QDLVNDGPDDRPAGTRSVRAPVTK 280

  Fly   505 VHAHQQQQQQQ-------QQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGASCHL-VEAQGQHYV 561
            ||......|:.       ..:.|..:.|.: ||.|.:|...         |.|:| ::.:|..:|
Mouse   281 VHGGAGSAQRMPLCDKCGSGIVGAVVKARD-KYRHPECFVC---------ADCNLNLKQKGYFFV 335

  Fly   562  561
            Mouse   336  335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeobox	313..360	CDD:278475	14/50 (28%)
Pdlim3	NP_001361581.1	PDZ_signaling	2..80	CDD:238492	18/83 (22%)
		DUF4749	184..268	CDD:374237	19/111 (17%)
		LIM_ALP	294..346	CDD:188834	11/52 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R6207
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.030