Protein Alignment repo and Pax7

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: XP_006239325.1
• Gene: Pax7 / 500574
• RGDID: 1564360
• Length: 505
• Species: Rattus norvegicus
• Alignment Length: 545
• Identity: 142/545 - (26%)
• Similarity: 205/545 - (37%)
• Gaps: 143/545 - (26%)

  Fly   133 PPPSHN----GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSP 193
            |.|..|    |..| :.|:...|.:..||.|:.    :||:      |.    |..::|......
  Rat    14 PGPGQNYPRTGFPL-EVSTPLGQGRVNQLGGVF----INGR------PL----PNHIRHKIVEMA 63

  Fly   194 HH---------LDHLDHG--SDGLLQDSSPVMINGGSAGG----KLKKPD--------------- 228
            ||         ...:.||  |..|.:......|..|:.||    ::..||
  Rat    64 HHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGM 128

  Fly   229 ---EMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNA-------------------NSSSSAGVGI 271
               |:..:|...|     ....|||.:|..:.....                   :....|...|
  Rat   129 FSWEIRDRLLKDG-----HCDRSTVPSGLVSSISRVLRIKFGKKEDDEEGDKKEEDGEKKAKHSI 188

  Fly   272 QGAAGTAGGVAAPAAKKDGSSSKKKGD-PNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFARE 335
            .|..|..|.     ...:||..:.:.| |...|::::||||||.||||||:||||..|||::.||
  Rat   189 DGILGDKGN-----RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTRE 248

  Fly   336 ELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTG----YIKTSTPPTA--TLNPGTLAPPFTSYP 394
            |||.:..|:|:||||||.||||:|||.....:..    .:....|||.  ||.|..|  |.::||
  Rat   249 ELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQL--PDSAYP 311

  Fly   395 QTTTVTPPGSMDSWTSYQTPYELTP----QFSLLSPAASPYGTYSGQYGAYVHESQLFPMRH-YE 454
             ||||    |.|..::...|..|.|    |..|.:.||:  ...|..|||          || :.
  Rat   312 -TTTV----SQDGGSTVHRPQPLPPSTMHQGGLAAAAAA--ADSSSAYGA----------RHSFS 359

  Fly   455 YGSPTRMEMGATTGSVAGNGDESVANGGSYQTAEL----QTAQQQQLADGTLVTVHAHQQQQQQQ 515
            ..|.:.|..||.:     |....|:||.|.|...:    .....|..||.::..:|.
  Rat   360 SYSDSFMNPGAPS-----NHMNPVSNGLSPQVMSILSNPSAVPPQPQADFSISPLHG-------- 411

  Fly   516 QQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGASCHLVEAQGQHYVTTATGGAA--SAGGTSSDD 578
                    ..:.|..:...|.|....::  ||.|  |..:|.....|.:|.|.:  ...|.....
  Rat   412 --------GLDSASSISASCSQRADSIK--PGDS--LPTSQSYCPPTYSTTGYSVDPVAGYQYSQ 464

  Fly   579 NDSGGMQTVIKSEEVSQQQQQQQGQ 603
            .....:..:.|:..:|.|::.:.|:
  Rat   465 YGQTAVDYLAKNVSLSTQRRMKLGE 489

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	32/47 (68%)
Pax7	XP_006239325.1	PAX	34..161	CDD:128645	28/145 (19%)
		Homeodomain	218..274	CDD:459649	37/55 (67%)
		Pax7	<354..385	CDD:403540	12/45 (27%)