DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment repo and alx4b

DIOPT Version :9

Sequence 1:	NP_477026.1	Gene:	repo / 47285	FlyBaseID:	FBgn0011701	Length:	612	Species:	Drosophila melanogaster
Sequence 2:	NP_001297007.1	Gene:	alx4b / 497424	ZFINID:	ZDB-GENE-050208-140	Length:	259	Species:	Danio rerio

Alignment Length:	247	Identity:	50/247 - (20%)
Similarity:	87/247 - (35%)	Gaps:	65/247 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly   406 DSWTSYQTPYELTPQFSLLSPA---------ASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRM 461
            |:..||   .::|...|..|||         |:||.|:......|  .....|.:...||...|.
Zfish     4 DTCVSY---CDMTSMDSYYSPAAPGQGRVQQANPYRTFQSSDSKY--SPTFLPAKGQTYGEKPRS 63

  Fly   462 EMGATTGSVAGNGDESVANGGSYQTAEL--------QTAQQQQLADGTLVTVHA----------H 508
            .......::    |:|.|. |:|....|        ..::..:|.||.|::.:.          .
Zfish    64 PFHQDCPTL----DDSTAE-GAYSKYHLFMQRPACKSPSEDSKLEDGALISCYGVVSESPGKWRK 123

  Fly   509 QQQQQQQQQLNGKYLSAEE-------AKYVHLQCHQSGGGLELSPGAS--------CHLVEAQGQ 558
            :::..|.||:...:.:|.|       ..|..:   |:...|..|..||        |..|.:...
Zfish   124 RERFGQMQQVRTHFSTAYELPLLTRPENYAQI---QNPSWLSGSSSASPVPGCVVPCDTVSSCMT 185

  Fly   559 HYVTTATG-----GAASAGGTSSDDN-----DSGGMQTVIKSEEVSQQQQQQ 600
            .:..:|:|     |..|.||:.:..:     .|.|:...|...::|.:..::
Zfish   186 PHPHSASGVSDFLGMPSPGGSMAQTHMGSLFGSSGVGGTINGYDLSVEPDRK 237

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeobox	313..360	CDD:278475
alx4b	NP_001297007.1	OAR	235..252	CDD:281777	0/3 (0%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24329
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	2.010