DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and pax3

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:548 Identity:146/548 - (26%)
Similarity:201/548 - (36%) Gaps:151/548 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 PPPSHN----GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSP 193
            |.|..|    |..| :.|:...|.:..||.|:.    :||:      |.    |..::|......
 Frog    15 PGPGQNYPRTGFPL-EVSTPLGQGRVNQLGGVF----INGR------PL----PNHIRHKIVEMA 64

  Fly   194 HH---------LDHLDHG--SDGLLQDSSPVMINGGSAGGKLKK----PD--------------- 228
            ||         ...:.||  |..|.:......|..|:.||...|    |:               
 Frog    65 HHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPEVEKKIEEFKRDNPGM 129

  Fly   229 ---EMCSQLEAGGA---GVTPPSSSSTVVNGTTNGTGN-----------ANSSSSAGVGIQGAAG 276
               |:..:|...|.   ...|..||.:.:..:..|.|:           ..|...|...|.|...
 Frog   130 FSWEIRDKLLKDGVCDRNTVPSVSSISRILRSKFGKGDEEDIELDRKEQEESEKRAKHSIDGILR 194

  Fly   277 TAGGVAAPAA--KKDGSSSKKKGD-PNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELA 338
            .    .|||:  .::||....:.| |...|::::||||||.|||||||||||..|||::.|||||
 Frog   195 E----RAPASPESEEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELA 255

  Fly   339 IKLNLSESRVQVWFQNRRAKWRKHEPPRK----TGYIKTSTPPTATLNPGTLAPPFTSYPQTTTV 399
            .:..|:|:||||||.||||:|||.....:    ...|..:.||.|.....|.....||| |.|::
 Frog   256 QRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGAFPPAAMPALPTYQLSETSY-QPTSI 319

  Fly   400 TPPGSMDSWTSYQTPYELTP----QFSLLS--PAASPYGTYSGQYGAYVHESQLFPMRHYEYGSP 458
             |....|...:...|..|.|    |.||.|  .::|.|...||::|...:.....|    ..|..
 Frog   320 -PQAVSDPSNTVHRPQPLPPSSVHQSSLPSNPESSSAYCLPSGRHGFSSYTDSFVP----PSGPS 379

  Fly   459 TRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQLADGTLVTVHA---HQQQQQQQQQLNG 520
            ..|             :.::.||.|.|..             .|:|.|.   ||.|....     
 Frog   380 NPM-------------NPAIGNGLSPQVM-------------GLLTNHGGVPHQPQTDYA----- 413

  Fly   521 KYLSAEEAKYVHLQCHQSGGGLE--LSPGASCHLVEAQGQHYVTTATGGAASAGGTSSDDNDSGG 583
              ||            ...||||  .:..|||    :|...::.:....:.|........:.|| 
 Frog   414 --LS------------PLTGGLEPPTAVSASC----SQRLEHMKSLDSLSTSQSYCPPTYSTSG- 459

  Fly   584 MQTVIKSEEVSQQQQQQQGQS---YVLP 608
                ...|.|:..|..|.|||   |:.|
 Frog   460 ----YSMEPVTGYQYPQYGQSAFHYLKP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 32/46 (70%)
pax3XP_012825755.1 PAX 35..162 CDD:238076 27/140 (19%)
Homeobox 224..278 CDD:365835 38/53 (72%)
Pax7 349..393 CDD:372070 11/60 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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