DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and pax3

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:11 Identity:3/11 - (27%)
Similarity:7/11 - (63%) Gaps:0/11 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 MIKKKREAMEK 42
            |:..:|:..:|
 Frog    33 MVSARRQLRKK 43

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649
pax3XP_012825755.1 PAX 35..162 CDD:238076 2/9 (22%)
Homeodomain 222..278 CDD:459649
Pax7 349..393 CDD:403540
Blue background indicates that the domain is not in the aligned region.

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