Protein Alignment repo and sv

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Alignment Length: 608
• Identity: 118/608 - (19%)
• Similarity: 180/608 - (29%)
• Gaps: 235/608 - (38%)

  Fly   114 EQQQQQQHHHQHHQHYTATPPPSHN------GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDY 172
            :.|..||||..|||....: |..||      |..|....:..|.|...|       | |:|...|
  Fly    49 DSQHLQQHHLTHHQQQDVS-PTLHNLQNTRTGDSLSTTINTNQNQHGHQ-------H-LSGSNMY 104

  Fly   173 SSSPK---------DQYEPQQLQHLYGGSP-----------------HHLDHLDHGSDGLLQDSS 211
            :||..         |:|..:.|.::...:.                 ..::.:.:|::.  ..||
  Fly   105 TSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEWITAMNDIQNGAED--SHSS 167

  Fly   212 PVMINGGSAGGKLKKPDEMCSQLEAGGAGVT----PPSSSSTVVNGTTNGTGNANSSSSAGVGIQ 272
            ...|:|...||        .:||  ||..|.    |......:|....||....:.|....|. .
  Fly   168 QGSISGDGHGG--------VNQL--GGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVS-H 221

  Fly   273 GA---------------AGTAGG----VAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEE 318
            |.               ||..||    ||.|.. .|..::.|:.:|          |..|:::.
  Fly   222 GCVSKILSRYYETGSFKAGVIGGSKPKVATPPV-VDAIANYKRENP----------TMFAWEIR- 274

  Fly   319 LERAFERAPYPDVFAREELAIKLNL-SESRVQVWFQNRRAKWRKHEPPRKT---------GYIKT 373
                       |....|.:..:.|: |.|.:....:|:.|:..||....:.         |:|.|
  Fly   275 -----------DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIAT 328

  Fly   374 STPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQY 438
            .:..::|   ||:..|          .||.|..|..|..|.         :|.:||
  Fly   329 ESVDSST---GTIGEP----------QPPTSNSSANSVNTN---------VSASAS--------- 362

  Fly   439 GAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESV------ANGGSYQTAELQTAQQQQL 497
               ||                        .|:..:|.:||      .|..|.:|..:.:..:|:.
  Fly   363 ---VH------------------------ASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRT 400

  Fly   498 A----DGTLVTVHA-HQQQQQQQQQLNGKYLSAEEAKYVHLQCHQ-------------------- 537
            .    :|.|...|. |.........:|....:....|...::.|.
  Fly   401 TGYSINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMS 465

  Fly   538 ------------SG--------------GGLELSPGASCHLV--EAQGQHYVTTATGGAASAGGT 574
                        ||              |.|..|.| :|...  ||......|..:|..|:|.|
  Fly   466 TYSGDQLYTNIWSGKWCIKDDHKLLAELGNLTASTG-NCPATYYEASNGFSTTPISGSGATASG- 528

  Fly   575 SSDDNDSGGMQTVIKSEEVSQQQ 597
                ||:..:...|.:  :||.|
  Fly   529 ----NDTSMLYDSITT--ISQTQ 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	8/48 (17%)
sv	NP_524633.3	PAX	175..299	CDD:128645	31/157 (20%)