Protein Alignment repo and abd-A

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 626
• Identity: 132/626 - (21%)
• Similarity: 182/626 - (29%)
• Gaps: 291/626 - (46%)

  Fly    75 SGGA----------GGSPNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQ----QQQQH-HHQ 124
            |||:          |.||:        :.:...||.|::.    ||  |:||    ||||| |||
  Fly    94 SGGSLSPSHLSQHLGQSPH--------SPVSSSSPFQQHH----PQ--VQQQHLNHQQQQHLHHQ 144

  Fly   125 HHQHYTATPPPSHNGILLHKQSS----QQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQL 185
            ..||:             |:.||    .|.||||..:          .||..::.....:..|||
  Fly   145 QQQHH-------------HQYSSLSAALQLQQQQHHI----------SKLAAAAVASHGHAHQQL 186

  Fly   186 --------QHLYGGSPHHLDHLDHGSDGL---LQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGA 239
                    ....|.|.........||..|   |.|:||     |||......  ...|.:.|..|
  Fly   187 LLTPPSAGNSQAGDSSCSPSPSASGSSSLHRSLNDNSP-----GSASASASA--SAASSVAAAAA 244

  Fly   240 GVTPPSSSSTVV-------------------NGTTNGTG-------------------------- 259
            .....:|||..:                   :|....||
  Fly   245 AAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASA 309

  Fly   260 ---------------NANSSSSAGV---------------GIQGAAGTAGGVAAPAAKK------ 288
                           :|.|::|||.               |:...||.|||.......:
  Fly   310 SAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTL 374

  Fly   289 ---DGSSSKKK--GD---PNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSE 345
               .||..::.  ||   |||..:::.|.|:|.:|..|||:.|....|.....|.|:|..|.|:|
  Fly   375 TDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTE 439

  Fly   346 SRVQVWFQNRRAKWRK--------HEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPP 402
            .::::||||||.|.:|        :|..|:.
  Fly   440 RQIKIWFQNRRMKLKKELRAVKEINEQARRD---------------------------------- 470

  Fly   403 GSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGATT 467
                                                    .|.|            .:|:...|.
  Fly   471 ----------------------------------------REEQ------------EKMKAQETM 483

  Fly   468 GSVAGNGDESVANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVH 532
            .|             :.|..::|..||||           .|||||||||        .:.:...
  Fly   484 KS-------------AQQNKQVQQQQQQQ-----------QQQQQQQQQQ--------HQQQQQQ 516

  Fly   533 LQCHQSGGGLELSPGASCHLVEAQGQHYVTTATGGAASAGG 573
            .|.|.|  .:..:||...|.|..|....:....|.....||
  Fly   517 PQDHHS--IIAHNPGHLHHSVVGQNDLKLGLGMGVGVGVGG 555

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	19/47 (40%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	22/55 (40%)
		Abdominal-A	456..478	CDD:403567	4/107 (4%)