DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and ems

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster


Alignment Length:448 Identity:104/448 - (23%)
Similarity:139/448 - (31%) Gaps:145/448 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GPLNPLGAKPLMPTTTAM-------HPVMLGSVHEL-----CSQQQ------------------- 50
            |..|..|:.|..|..|..       |.:|....|.|     .:|||                   
  Fly    56 GERNVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVL 120

  Fly    51 -----QQQQQQRLP----DCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYEYI 106
                 .|||....|    |...:|.......|.:.|.  || ..|:|....:....:.|.|.|..
  Fly   121 HQHLLMQQQHPGTPKSHQDIQELLQRLHHNAAMASGL--SP-LQTRLSPETEQPQMAVSLKRERS 182

  Fly   107 SAPQKLVEQQQQQQHHHQHHQHYTATPP---------PSHNGILL----HKQSSQQQQQQQQQLV 158
            .||..:.:.:...|.....|     |||         ||.:..||    |....||||||     
  Fly   183 PAPPAMEQAENPAQRIQPPH-----TPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQ----- 237

  Fly   159 GILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGK 223
                             |...|....:.|..|                   :.|:|:.|....| 
  Fly   238 -----------------PPPNYPKPAMMHPGG-------------------AGPMMMPGMPPAG- 265

  Fly   224 LKKPDEM---CSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAG-TAGGVAAP 284
            |.:|..|   ...:..|..|:....:....:|.........|....|....|.||. .||.|..|
  Fly   266 LVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGP 330

  Fly   285 AAKKDGSSS--------------------------KKKGD------------PNGIKKKKTRTTF 311
            ||....::.                          .:.|.            |...|.|:.||.|
  Fly   331 AAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAF 395

  Fly   312 TAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTG 369
            :..||.:||.|||...|.....|:.||..|||||::|:|||||||.|.::.:...:.|
  Fly   396 SPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQEDEKG 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 25/47 (53%)
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)

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