Protein Alignment repo and Scr

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 590
• Identity: 138/590 - (23%)
• Similarity: 192/590 - (32%)
• Gaps: 186/590 - (31%)

  Fly    42 VHELCS-QQQQQQQQQRLPDCNTILPNGGGGGAG-------SGGAGGSPNYVTKL-----DFVNK 93
            |:.|.| ..||...||..|........|.|||||       |||..|........     |:...
  Fly    14 VNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPA 78

  Fly    94 MGCYSPS----------------------QKYEYIS-APQKLVEQQQQQQHHHQHHQHYTATPPP 135
            ...|:|:                      ...:|.. .||:|:.|||||| ..|.|.|..|....
  Fly    79 AAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQ-QQQQHAHAAAAVAA 142

  Fly   136 SHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLD 200
            .....|..:|..||||||||          .|....|::.|...          |||
  Fly   143 QQQQQLAQQQHPQQQQQQQQ----------ANISCKYANDPVTP----------GGS-------- 179

  Fly   201 HGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNG-----TGN 260
             |..|:...::    |..||.........:.|..:.....::|..|.|:||......     .|.
  Fly   180 -GGGGVSGSNN----NNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGG 239

  Fly   261 ANSSSSAGVGI------QGAAGTAGGVAAP------------------AAKKDGSSSKKKGDP-- 299
            :.::::|..|:      .|.:|..|.|..|                  |.....|.:.||..|
  Fly   240 SLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQI 304

  Fly   300 ----------------NGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRV 348
                            || :.|:.||::|.||..|||:.|....|.....|.|:|..|.|:|.::
  Fly   305 YPWMKRVHLGTSTVNANG-ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQI 368

  Fly   349 QVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPP-----GSMDSW 408
            ::||||||.||:|..        |.::......:.|....|:..:    .:.|.     .: |:|
  Fly   369 KIWFQNRRMKWKKEH--------KMASMNIVPYHMGPYGHPYHQF----DIHPSQFAHLSAXDAW 421

  Fly   409 ----------TSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEM 463
                      ..||.||:       .:.|||....|..|.|..:.
  Fly   422 HFSGTGXRLNQLYQEPYQ-------TAAAASAASGYQSQDGGPIG-------------------- 459

  Fly   464 GATTGSVAG-NGDESVANGGSYQTAE----LQTAQQQQLAD---------GTLVTVHAHQQQQQQ 514
            |.:.|...| .|..|:|||||..:..    ...|...|..|         ..::....|||||..
  Fly   460 GGSVGVGGGAGGPGSLANGGSNGSGPNSLFASAASSSQAPDCIKYPQEFXSQVIIRQQHQQQQDN 524

  Fly   515 QQQLN 519
            ....|
  Fly   525 SMDRN 529

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	21/47 (45%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	25/55 (45%)