Protein Alignment repo and pb

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Alignment Length: 724
• Identity: 158/724 - (21%)
• Similarity: 222/724 - (30%)
• Gaps: 298/724 - (41%)

  Fly    18 PLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQRLPDCNTILPNGGGGGAG-SGGAGGS 81
            |||||                            |.|..|      |.||.||.|||| .||.||
  Fly    22 PLNPL----------------------------QVQTGQ------TSLPVGGCGGAGVVGGVGG- 51

  Fly    82 PNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQHHHQHHQHYTATPP-PSHNGILLHKQ 145
                        :|          :|..|..:.||              ..|| ||
  Fly    52 ------------VG----------VSVGQPGIGQQ--------------GVPPVPS--------- 71

  Fly   146 SSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDS 210
                          :|..:.:....|..|:....:............|...:.|:|     |...
  Fly    72 --------------VLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNH-----LSPE 117

  Fly   211 SPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAA 275
            ||          |:..|                      |.:|...|.| .|.:.:.|||:....
  Fly   118 SP----------KIGTP----------------------VGSGAIGGVG-VNVNVNVGVGVGYPV 149

  Fly   276 G----TAGGV-AAP--------AAKKDGSSSKKKGD--------PNGIKKKKTRTTFTAYQLEEL 319
            |    |..|: :.|        ...:..|::..:||        .||: .::.||.:|..||.||
  Fly   150 GVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGL-PRRLRTAYTNTQLLEL 213

  Fly   320 ERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKH---------------------- 362
            |:.|....|.....|.|:|..|:|:|.:|:|||||||.|.::.
  Fly   214 EKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSD 278

  Fly   363 -----------------EPPRKTGYIK---TSTPPTATLNP--GTLAPPFTSYPQT--------- 396
                             :.|..|...:   .:||.....||  |.|.|  .|..:|
  Fly   279 SNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTP--NSSLETGISSNLMGS 341

  Fly   397 TTVTPPGSMDSWTSYQTPYELTPQFSLLSP---------------------AASPYGTYSGQYGA 440
            |||:....:.:.:|..:...|.......||                     .|||:| |.....:
  Fly   342 TTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSSKASPFG-YENSTPS 405

  Fly   441 YV---HESQLFPMRHYEYGSPTRMEMG-----------AT----TGSVAGNGDESVANGGSY--- 484
            .|   .:|....:.:    :||...:|           ||    :.|.:|||......||.:
  Fly   406 LVSFRRDSDASAVGN----APTSKAVGKKRFQSAANAIATPTPLSDSNSGNGSGGGPAGGYFPGY 466

  Fly   485 --QTAELQTAQQQQLADGTLVTVHAHQQQ--QQQQQQLNGKYLSAEEAKYVHLQCH---QSGGGL 542
              ...:.|..|||||        |..|||  |||.|...||| ..|.|...|...|   |:..|.
  Fly   467 YPSPKQQQQVQQQQL--------HPQQQQLPQQQPQDYYGKY-DIEFAASPHHNPHNKQQALHGE 522

  Fly   543 ELSP---GASCH---LVEAQGQHYVTTATGGAASAGGTSSDDNDSGGMQTVIKSEE----VSQQQ 597
            .|||   .|:.|   ..:.|..|:.              .:.||:.|...:...::    ....|
  Fly   523 YLSPKPSSANFHQNSQQQQQNDHFY--------------YNYNDTNGTPYLNHQQQHHHHAQHHQ 573

  Fly   598 QQQQGQSYV 606
            |||..|::|
  Fly   574 QQQHHQNHV 582

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	22/47 (47%)
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	25/55 (45%)