DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment repo and si:dkey-43p13.5

DIOPT Version :9

Sequence 1:	NP_477026.1	Gene:	repo / 47285	FlyBaseID:	FBgn0011701	Length:	612	Species:	Drosophila melanogaster
Sequence 2:	XP_002661267.2	Gene:	si:dkey-43p13.5 / 407678	ZFINID:	ZDB-GENE-131121-510	Length:	315	Species:	Danio rerio

Alignment Length:	182	Identity:	55/182 - (30%)
Similarity:	88/182 - (48%)	Gaps:	23/182 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly   285 AAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQ 349
            |....|..:....:|..:|:::.|..::::||||||:.|:...|||:|.||.||::|:|.|:|||
Zfish   122 AHPSSGHPADNIDEPRPVKQRRARANYSSWQLEELEKTFQSTHYPDIFMREALALRLDLIEARVQ 186

  Fly   350 VWFQNRRAKWRKH-EPPRKTGY------IKTSTPPTATLNP----GTLAP----------PFTSY 393
            |||||||||.|:. :...:||.      ..|..|.::..||    .:.:|          |....
Zfish   187 VWFQNRRAKMRRQLKLQIQTGEQCSQRDTDTRHPESSISNPELHNNSPSPCWDRNQDRTNPAHPK 251

  Fly   394 PQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHES 445
            |..:.:..|.: |.....|.|....|: .|.|.:.:.....:..|.|.:|.:
Zfish   252 PSPSAIQSPVT-DLLQDQQDPEAPGPE-DLRSCSIAKLRAKARDYEAEIHST 301

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeobox	313..360	CDD:278475	30/46 (65%)
si:dkey-43p13.5	XP_002661267.2	Homeobox	145..197	CDD:278475	31/51 (61%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170580714
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24329
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.940