DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and prrx1a

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_999899.1 Gene:prrx1a / 406431 ZFINID:ZDB-GENE-020905-5 Length:245 Species:Danio rerio


Alignment Length:182 Identity:66/182 - (36%)
Similarity:91/182 - (50%) Gaps:39/182 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 VGIQG--AAGTAGG--VAAPAAKKDGSSSKKKGDP-NGIKKKK-----TRTTFTAYQLEELERAF 323
            ||.|.  :||.||.  :.:|.......:::::.:. |..:|||     .||||.:.||:.|||.|
Zfish    51 VGAQAEESAGEAGRSMLESPGLTSGSDTTQQENEQLNAEEKKKRKQRRNRTTFNSSQLQALERVF 115

  Fly   324 ERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHE----PPRKTGYIKT-STPPTATLNP 383
            ||..|||.|.||:||.::||:|:||||||||||||:|::|    ..:....:|: |...||...|
Zfish   116 ERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSFSGEVTAVEQP 180

  Fly   384 GTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYS 435
            ....|.    |:      |....||.|              ||:.|...|||
Zfish   181 IVPRPA----PR------PNDYLSWGS--------------SPSYSAMATYS 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 31/47 (66%)
prrx1aNP_999899.1 Homeodomain 101..153 CDD:459649 34/51 (67%)
OAR 220..237 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.