DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and pdlim7

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_957134.1 Gene:pdlim7 / 393813 ZFINID:ZDB-GENE-040426-2092 Length:419 Species:Danio rerio


Alignment Length:345 Identity:69/345 - (20%)
Similarity:105/345 - (30%) Gaps:135/345 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 AGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAP 284
            |||:.|  |.:.|..........|    ||.:|....     ..|:|.|      :|:||.|..|
Zfish    88 AGGEQK--DSLTSSSSQPKYSFAP----STAINKMAR-----PFSASPG------SGSAGPVIKP 135

  Fly   285 A--AKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESR 347
            .  |.|...||...|  :|:                       ||.|       :.:|...::  
Zfish   136 VSYALKPALSSPHNG--HGV-----------------------APCP-------VTVKSKPAD-- 166

  Fly   348 VQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPG-TLAPPFTSYPQTTTVTPPGSMDSW--- 408
                         ||:        ....|..|.::.| ...||:        ||.||..|.:   
Zfish   167 -------------KHD--------AVQAPAKAPVSSGPACRPPW--------VTDPGFADRYHPD 202

  Fly   409 ------TSYQTPYELTP---QFSLLSPA-ASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEM 463
                  |.:..|.:.||   :.|:|..| .||           .|.|...|:             
Zfish   203 KSSTVVTQHTQPLQPTPMQNRSSILQAAQQSP-----------AHSSTATPL------------- 243

  Fly   464 GATTGSVAGNGDESVANGGSYQTAELQTAQQQQLAD--------GTLVTVHAHQQQQQQ-----Q 515
             ....|....|...||.|.|:...|....|.::|.|        |::.....:..:...     :
Zfish   244 -CAACSKIIRGRYVVALGRSWHPEEFMCCQCKRLLDEGGFFEEKGSIYCSKCYDNRYSPNCAKCK 307

  Fly   516 QQLNGKYLSAEEAKYVHLQC 535
            :.:.|:.:.|.:..| |:||
Zfish   308 KIITGEIMHALKMTY-HVQC 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 4/46 (9%)
pdlim7NP_957134.1 PDZ_signaling 3..81 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..232 17/65 (26%)
LIM1_Enigma 244..295 CDD:188836 11/50 (22%)
LIM2_Enigma 303..354 CDD:188840 6/25 (24%)
LIM3_Enigma 362..416 CDD:188842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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