DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and PHDP

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster


Alignment Length:189 Identity:64/189 - (33%)
Similarity:89/189 - (47%) Gaps:48/189 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 GGSPHHLDHLDHGSDGLLQDSS-PVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVN- 252
            ||.....:|::|.:  |:.||| .:..|..:..|.|.:...:.             .|..|.|: 
  Fly    30 GGGLSVANHINHYN--LMIDSSYKLCANESAIRGSLNQESSLL-------------FSKITTVSE 79

  Fly   253 --GTTNGTGNANSS---SSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFT 312
              ..|:..|:.|:.   .|.|                   .||.|...|.     |:::.|||||
  Fly    80 FYPATHNIGSYNTDFHLKSYG-------------------DDGLSLTDKS-----KQRRIRTTFT 120

  Fly   313 AYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYI 371
            :.||.|||:.|....|||::.|||:|.||:|:|:||||||||||||:||.|  |...||
  Fly   121 SNQLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQE--RHAIYI 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 29/46 (63%)
PHDPNP_523834.1 Homeobox 116..168 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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