Protein Alignment repo and CG9876

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Alignment Length: 340
• Identity: 94/340 - (27%)
• Similarity: 134/340 - (39%)
• Gaps: 98/340 - (28%)

  Fly   154 QQQL-------VGILDYHP-LNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGS-DGLLQD 209
            ||||       .|...|.| ::|:: |||......|.:........|..:||.:...| |.:::
  Fly     5 QQQLHSLPVGNPGNFYYGPTVSGEI-YSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIME- 67

  Fly   210 SSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGA 274
                |.:...:.||:..  |:.|.....||                 |.|.|:..:.....:
  Fly    68 ----MKHDAYSKGKMAM--ELSSNFGPTGA-----------------GCGGADRPAPCSGNL--- 106

  Fly   275 AGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAI 339
              .|||         |..|:        |.::.||||::.||..||:.|||..|||.|.|||||.
  Fly   107 --PAGG---------GHHSR--------KPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELAT 152

  Fly   340 KLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPPGS 404
            |::|||:||||||||||||:|::|  |..|        :.||        ..:.||........:
  Fly   153 KVHLSEARVQVWFQNRRAKFRRNE--RSVG--------SRTL--------LDTAPQLVPAPISNN 199

  Fly   405 MDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHY-----------EYGSP 458
            |..:.:...|:...|         .|.|.|:..:|..    :|...::|           ..||.
  Fly   200 MHKYANMPHPHPQPP---------PPPGAYALNFGPL----ELRSCQNYTNCYGGFGSSGASGSG 251

  Fly   459 TRMEMGATTGSVAGN 473
            .....|||...||.|
  Fly   252 VCSFFGATNYCVAAN 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	32/47 (68%)
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	36/55 (65%)