Protein Alignment repo and Rx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_726006.3
• Gene: Rx / 37367
• FlyBaseID: FBgn0020617
• Length: 904
• Species: Drosophila melanogaster
• Alignment Length: 715
• Identity: 171/715 - (23%)
• Similarity: 255/715 - (35%)
• Gaps: 270/715 - (37%)

  Fly    15 GGGPLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQRLPDCNTILPNGGGGGAGSGG-- 77
            |....||..| ||.|::...|...|.:   |.:|.|:||.|......::  |.|.|.....|.
  Fly   310 GANGANPPPA-PLPPSSFGSHQQHLAA---LAAQAQEQQNQHSKYAKSS--PTGAGPPPPPGAYF 368

  Fly    78 -----AGGSPNYVT----------------------KLDFVNKMGCYSPSQKYEYISAPQKL--- 112
                 |..:|:.:.                      :||..:..   :||.:.: ::|.:|.
  Fly   369 MESQTAPVAPSQINYDERSMSSASDLEEDDDDAAKLQLDVTSPP---TPSPRGQ-LAAKRKSAGV 429

  Fly   113 --------------------VEQQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQL 157
                                :..:..::.|||...|              |.|..||||||||||
  Fly   430 FCDDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSH--------------HHQQQQQQQQQQQQL 480

  Fly   158 VGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGG 222
                                     ||.|    |..|...:..:|:.           ||.|
  Fly   481 -------------------------QQQQ----GFQHDFRNSGNGNP-----------NGNS--- 502

  Fly   223 KLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAK 287
                        .:|..|....:.|.::|||:...:.:.|.::|:.   ||...|:|
  Fly   503 ------------NSGDHGERLNADSDSLVNGSCASSEDLNQTNSSE---QGEKITSG-------- 544

  Fly   288 KDGSSSKKKGDPNGIKKK--KTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQV 350
                |..:..|.|..|||  :.|||||.|||.|||||||::.||||::|||||:|:||.|.||||
  Fly   545 ----SDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 605

  Fly   351 WFQNRRAKWRKHEP--------------PRKTGYIKTSTPPTATLNPGTLA--PPFTSYPQT--- 396
            ||||||||||:.|.              |.:.|...:..|....|:|..|:  |.|.|:|||
  Fly   606 WFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYP 670

  Fly   397 TTVTPPGS-------MDSWTS-------------------------------YQTPY-------- 415
            :.:|||.|       |.|..:                               :..|:
  Fly   671 SYLTPPLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGSHHVV 735

  Fly   416 ---ELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEM--GATTGSVAGNGD 475
               .|:|..|.:||.|:..|  |..:|       :.|:     |:|....:  .:|..:||.:..
  Fly   736 PLSHLSPHLSRMSPHATSLG--SPHHG-------VTPL-----GTPLHSSLPPSSTATTVAVSSS 786

  Fly   476 ESVANGGSYQTAELQTAQQ-QQLADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSG 539
            :|.::..|.:.:....... |.|:.|            ......:|:.||::          ...
  Fly   787 QSSSSSASLECSGPDVCMSPQNLSIG------------NADSNGDGRDLSSD----------LDA 829

  Fly   540 GGLELSPGASCHLVEAQGQHYV-----------TTATGGAASAGGTSSDDNDSGGMQTV-IKSEE 592
            |....:||:|.....|.....:           .|.||..:|   |...|..|..:.|: ||::|
  Fly   830 GSTSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSS---TPPTDMRSNSIATLRIKAKE 891

  Fly   593  592
              Fly   892  891

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	36/47 (77%)
Rx	NP_726006.3	Homeodomain	560..616	CDD:459649	41/55 (75%)
		OAR	876..892	CDD:461067	6/16 (38%)