Protein Alignment repo and lms

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 260
• Identity: 74/260 - (28%)
• Similarity: 113/260 - (43%)
• Gaps: 66/260 - (25%)

  Fly   263 SSSSAGVGIQGAAGTAGG------VAAPAAKK-------DGSS--SKKKGDPNGI---KKKKTRT 309
            ||:|....:|..:|..|.      .::||...       ||.|  .....|.||:   :||:.||
  Fly    27 SSTSFEDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRT 91

  Fly   310 TFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKT- 373
            .|:|.|::.||..|||..|..|..|..||.:|.|:|:::::||||||.||::    :.|..::|
  Fly    92 AFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKR----KYTSDVETL 152

  Fly   374 STPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLL---SPAASPYGTYS 435
            ::...|.|..|.||.|.....:.           |...|||...||..|::   |.:|:|..:.:
  Fly   153 ASHYYAQLGIGGLARPMVVGDRL-----------WLFSQTPTGPTPIQSIMLNGSGSAAPMASAT 206

  Fly   436 GQYGAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQLADG 500
            ...|:        |||.|           ||:|.:......||          :::|:...||.|
  Fly   207 TATGS--------PMRPY-----------ATSGGMPPLPGPSV----------MESARNAILARG 242

  Fly   501  500
              Fly   243  242

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	23/47 (49%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	20/72 (28%)
		Homeodomain	87..143	CDD:459649	27/55 (49%)