Protein Alignment repo and Phox2b

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001414175.1
• Gene: Phox2b / 364152
• RGDID: 1560582
• Length: 314
• Species: Rattus norvegicus
• Alignment Length: 174
• Identity: 62/174 - (35%)
• Similarity: 79/174 - (45%)
• Gaps: 44/174 - (25%)

  Fly   263 SSSSAGVGIQ------------GAAGTAGGVAAPAAKKDGSSS-------KKKGDPNGI----KK 304
            ||.|...|.|            |......|..:....:|..||       |...|..|:    |:
  Rat    34 SSCSQASGFQYNPIRTTFGATSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQ 98

  Fly   305 KKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHE------ 363
            ::.|||||:.||:||||.|....|||::.|||||:|::|:|:||||||||||||:||.|
  Rat    99 RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAA 163

  Fly   364 -PPRKTGYI--------------KTSTPPTATLNPGTLAPPFTS 392
             ...|.|..              ..||.|.:|..||....|..|
  Rat   164 AAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPS 207

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	30/47 (64%)
Phox2b	NP_001414175.1	Homeodomain	99..155	CDD:459649	35/55 (64%)