Protein Alignment repo and Rhox12

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001020072.1
• Gene: Rhox12 / 363437
• RGDID: 1563789
• Length: 175
• Species: Rattus norvegicus
• Alignment Length: 181
• Identity: 53/181 - (29%)
• Similarity: 74/181 - (40%)
• Gaps: 39/181 - (21%)

  Fly   198 HLDHGSDGLLQDSSPVMIN------GGSAG-GKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTT 255
            |::..|..|.::...|.::      |||.| |.|...|::..:      |:  |.....:..|..
  Rat     7 HVEPSSYKLEENEIEVSLDADEAAEGGSFGEGSLNGSDKLKYE------GI--PDKDDRIYVGDV 63

  Fly   256 NGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSS----SKKKGDPNGIKKKKTRTT----FT 312
            ...||.......| ..||:               |.|    .|....|...:.::||..    .|
  Rat    64 KYIGNDVKDEYRG-SHQGS---------------GDSQLEEQKNLASPTIPQFRRTRPRIQLGLT 112

  Fly   313 AYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHE 363
            ..||.|||..||...||||..|..||..|.|:||||:.||:.|||::||.:
  Rat   113 PRQLSELEDFFETTKYPDVITRRNLAKHLYLAESRVKRWFKRRRARYRKEQ 163

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	25/47 (53%)
Rhox12	NP_001020072.1	homeodomain	101..163	CDD:238039	30/61 (49%)