DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and oc

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster


Alignment Length:427 Identity:103/427 - (24%)
Similarity:141/427 - (33%) Gaps:140/427 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 HLYGG-SPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTV 250
            |.||| .|||  .:.||.   |....|:...|         |..:...|||.|..          
  Fly    16 HSYGGPHPHH--SVPHGP---LPPGMPMPSLG---------PFGLPHGLEAVGFS---------- 56

  Fly   251 VNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQ 315
                                 ||..|.                      |..|:::.|||||..|
  Fly    57 ---------------------QGMWGV----------------------NTRKQRRERTTFTRAQ 78

  Fly   316 LEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKH-EPPRKTGYIKTS----- 374
            |:.||..|.:..|||:|.|||:|:|:||.||||||||:|||||.|:. :..:::..:.:|     
  Fly    79 LDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSNSLSSSKNASG 143

  Fly   375 -----TPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTY 434
                 :..:::.|..:.:....|.....|.:..|:..:.:|.:.....:.|    ....|..|..
  Fly   144 GGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQ----QGGGSSGGNN 204

  Fly   435 S--------GQYGAYVHESQLFPMRHYEYGSPTRMEMGATT-------------GSVAGNGDESV 478
            |        ....|.|..:|.....|..:.|.........|             |:...|...|.
  Fly   205 SNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQGNSTPNSSSSG 269

  Fly   479 ANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYL---SAEEAKYVHLQC---HQ 537
            ..|||.....|..|    .|...|....|||         |...|   .|.....|.:.|   |.
  Fly   270 GGGGSQAGGHLSAA----AAAAALNVTAAHQ---------NSSPLLPTPATSVSPVSIVCKKEHL 321

  Fly   538 SGG-GLELSPGASCHLVEAQGQHYVTTATGGAASAGG 573
            ||| |..:..|..                ||.||:||
  Fly   322 SGGYGSSVGGGGG----------------GGGASSGG 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 29/47 (62%)
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 34/54 (63%)

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