DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and VSX1

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_055403.2 Gene:VSX1 / 30813 HGNCID:12723 Length:365 Species:Homo sapiens


Alignment Length:391 Identity:108/391 - (27%)
Similarity:149/391 - (38%) Gaps:145/391 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 DHGSDGLLQDSSPVMINGGSAGGKLKK----PDEMCSQLE----AG---GAGVTPPSSSSTVVNG 253
            |..|||  :.||..::.|||..|...:    .|.:..:.|    ||   |:|...|:.:.....|
Human     5 DSLSDG--RTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPG 67

  Fly   254 TTNGTGNANSSSSAGVGIQGAAGTAGGVAA-------------------PAA------------- 286
             .:|:..|..:...|:|:....||....||                   |||             
Human    68 -LDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGR 131

  Fly   287 -KKDGSSS-----KKKGDPNGI---------KKKKTRTTFTAYQLEELERAFERAPYPDVFAREE 336
             |:..|.|     .:..|.|.:         ||::.||.|||:||||||:||..|.||||:|||.
Human   132 QKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREM 196

  Fly   337 LAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTG-------------YIKTSTP-PTATLNP---- 383
            ||:|..|.|.|:|||||||||||||.|  ::.|             .::...| |.:.||.    
Human   197 LAVKTELPEDRIQVWFQNRRAKWRKRE--KRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGG 259

  Fly   384 --GTLAPPFTSYPQTT--TVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHE 444
              |:.||......:.:  .:..|||.|.                          .:|.:|:    
Human   260 LLGSCAPWLLGMHKKSMGMIRKPGSEDK--------------------------LAGLWGS---- 294

  Fly   445 SQLFPMRHYEYGSPTRMEMGATTGS---VAGNGDESV--------------------ANGGSYQT 486
                  .|::.|| ::.|.|:..||   ...||.|.|                    |.|||..|
Human   295 ------DHFKEGS-SQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNST 352

  Fly   487 A 487
            |
Human   353 A 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 34/47 (72%)
VSX1NP_055403.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 11/33 (33%)
Octapeptide motif 31..38 1/6 (17%)
PRK14959 <47..>149 CDD:184923 20/102 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..167 10/53 (19%)
Nuclear localization signal. /evidence=ECO:0000255 161..166 2/4 (50%)
Homeodomain 165..221 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 290..365 19/75 (25%)

Return to query results.
Submit another query.