Protein Alignment repo and Alx4

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001100023.1
• Gene: Alx4 / 296511
• RGDID: 1310201
• Length: 399
• Species: Rattus norvegicus
• Alignment Length: 309
• Identity: 99/309 - (32%)
• Similarity: 137/309 - (44%)
• Gaps: 63/309 - (20%)

  Fly   193 PHHLDHLDHGS-----DGLLQDSSPVMINGGSAG--GKLKKPDEMCSQLEAG-GAGVTPPSSSST 249
            |.|| :|..|:     ||.|:      :..||.|  ..|:.|   |...|:. |....||.|..
  Rat   107 PAHL-YLQRGACKTPPDGSLK------LQEGSGGHNAALQVP---CYAKESNLGEPELPPDSEP- 160

  Fly   250 VVNGTTNGTGNANSSSSA-GVGIQGAAGTAGG-VAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFT 312
                    .|..||..|. ..|.:|....||. :.:|..|.|..|||.       ||::.|||||
  Rat   161 --------VGMDNSYLSVKETGAKGPQDRAGAEIPSPLEKTDSESSKG-------KKRRNRTTFT 210

  Fly   313 AYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPP 377
            :|||||||:.|::..||||:|||:||::.:|:|:|||||||||||||||.|...:...::|....
  Rat   211 SYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFST 275

  Fly   378 TATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYG---------- 432
            ...|...|.|..:......:.:...|:.....:...|.:..|  :.:||.|.|.|
  Rat   276 AYELPLLTRAENYAQIQNPSWIGNNGAASPVPACVVPCDPVP--ACMSPHAHPPGSGASSVSDFL 338

  Fly   433 --TYSGQYGAYVHESQLF-------PMRHYEY-GSPTRMEMGATTGSVA 471
              :.:|.:....|...||       .:..||. |.|.|     .|.|:|
  Rat   339 SVSGAGSHVGQTHMGSLFGAAGISPGLNGYEMNGEPDR-----KTSSIA 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	32/47 (68%)
Alx4	NP_001100023.1	Homeodomain	203..259	CDD:459649	37/55 (67%)
		OAR	375..393	CDD:461067	4/13 (31%)