DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and Otp

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001093993.1 Gene:Otp / 294640 RGDID:727945 Length:325 Species:Rattus norvegicus


Alignment Length:239 Identity:76/239 - (31%)
Similarity:108/239 - (45%) Gaps:62/239 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 HLDHLDHGSDGLLQDSSPVM-----------INGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSS 248
            |.|.||....  ::|::.::           :.|...||   .|.::        |..:.|...:
  Rat     4 HADLLDARLG--MKDAAELLGHREAVKCRLGVGGSDPGG---HPGDL--------APNSDPVEGA 55

  Fly   249 TVVNG---TTNGTGNANSSSSA-----GVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNG-IKK 304
            |::.|   ||.|:..|:.:.||     ..|.||                |.:..:.|...| .|:
  Rat    56 TLLPGEDITTVGSTPASLAVSAKDPDKQPGPQG----------------GPNPSQAGQQQGQQKQ 104

  Fly   305 KKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTG 369
            |:.||.||..||.||||:|.:..|||:|.|||||:::.|:|||||||||||||||:|.:      
  Rat   105 KRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRK------ 163

  Fly   370 YIKTSTPPTATLNPGTL--APPFTSYPQTTTVTPPGSMDSWTSY 411
              ||:....|   ||||  .|....:|...........||..|:
  Rat   164 --KTTNVFRA---PGTLLPTPGLPQFPSAAAAAAAAMGDSLCSF 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 32/47 (68%)
OtpNP_001093993.1 Homeodomain 106..156 CDD:459649 31/49 (63%)
OAR 303..320 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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