DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and GSC2

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_005306.1 Gene:GSC2 / 2928 HGNCID:4613 Length:205 Species:Homo sapiens


Alignment Length:139 Identity:46/139 - (33%)
Similarity:62/139 - (44%) Gaps:33/139 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 SSAGVGIQGA--------------AGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQ 315
            ::||:|.:.|              |...|..|.|.|...||..         :.::.||.|:..|
Human    82 AAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGPGSQR---------RTRRHRTIFSEEQ 137

  Fly   316 LEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTAT 380
            |:.||..|.:..||||..||.||.::.|.|.||:|||:|||||||..:          ....:|.
Human   138 LQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQK----------RASASAR 192

  Fly   381 LNPGTLAPP 389
            |.||....|
Human   193 LLPGVKKSP 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 25/46 (54%)
GSC2NP_005306.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..58
Homeobox 129..182 CDD:278475 28/52 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..205 5/27 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.940

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