DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and Alx1

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_037053.1 Gene:Alx1 / 25401 RGDID:2273 Length:326 Species:Rattus norvegicus


Alignment Length:378 Identity:98/378 - (25%)
Similarity:147/378 - (38%) Gaps:113/378 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 QHYTATPPPSHN--------GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQ 183
            :.:....|||.|        |.|.|             ::..||.....||....          
  Rat     6 EKFALKSPPSKNSDFYMGTGGALEH-------------VMETLDNESFYGKATAG---------- 47

  Fly   184 QLQHLYGGSP---HHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPS 245
            :....:|..|   ||: .||..|.  .||||   :|.|            .:::|.        .
  Rat    48 KCVQAFGPLPRAEHHV-RLDRTSP--CQDSS---VNYG------------ITKVEG--------Q 86

  Fly   246 SSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTT 310
            ...|.:|...:|..|...|...|:             ...::.|....|...:.:..||::.|||
  Rat    87 PLHTELNRAMDGCNNLRMSPVKGM-------------PEKSELDELGDKCDSNVSSSKKRRHRTT 138

  Fly   311 FTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTST 375
            ||:.||||||:.|::..||||:.||:||::..|:|:|||||||||||||||.|   :.|.|:.:.
  Rat   139 FTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE---RYGQIQQAK 200

  Fly   376 PPTATLNPGTLAPPFTSYPQ----------------TTTVTPPGSMDSWTSYQTPYELTPQFSLL 424
            ...|.....::.|...||||                |:.:.|..:    :|..|||..:|:    
  Rat   201 SHFAATYDISVLPRTDSYPQIQNNLWAGNTSGGSVVTSCMLPRDA----SSCMTPYSHSPR---- 257

  Fly   425 SPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDES 477
              ..|.|..:|.....:.|    .|:.::...|       ..||:..|:..|:
  Rat   258 --TDSSYTGFSNHQNQFGH----VPLNNFFTDS-------LLTGTTNGHAFET 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 30/47 (64%)
Alx1NP_037053.1 Homeodomain 133..189 CDD:459649 35/55 (64%)
Transactivation domain. /evidence=ECO:0000269|PubMed:12390248 192..326 25/127 (20%)
OAR 302..320 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Blue background indicates that the domain is not in the aligned region.

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