DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and Rax

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_038861.2 Gene:Rax / 19434 MGIID:109632 Length:342 Species:Mus musculus


Alignment Length:320 Identity:99/320 - (30%)
Similarity:134/320 - (41%) Gaps:78/320 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 GGSPHHLDHLD-----HGSDGLLQDSSPVMINGGSAGGKLKKP----DEMCSQLEAGGAGVTPPS 245
            |||...|..::     ...||:| |:.|.  ...|...|.:.|    ...|.:..|||:..:||:
Mouse    26 GGSTSRLHSIEAILGFTKEDGIL-DTFPA--ERSSRSSKERDPRLGAQPACPKAPAGGSESSPPA 87

  Fly   246 SSSTVVNGTT------NGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKK 304
            :...|.....      ...|.|..|....||             |||   |.|...:.:|...|.
Mouse    88 APGFVPEYEATRPCYPKEQGEARPSPGLSVG-------------PAA---GDSKLSEEEPPKKKH 136

  Fly   305 KKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTG 369
            ::.|||||.|||.|||||||::.||||::|||||.|:||.|.||||||||||||||:.| ..:..
Mouse   137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQE-KLEVS 200

  Fly   370 YIK---------TSTPPTATLNP-GT-----LAPPFTSYPQTTTVTPPGSMDSWTSYQT------ 413
            .:|         :.:||::.|.| ||     ..||.::.|....:.||......|:.|:      
Mouse   201 SMKLQDSPLLSFSRSPPSSALAPLGTGPGSGSGPPGSALPLEPWLGPPLPGGGATALQSLPGFGP 265

  Fly   414 -----PYELTPQFSLLS-----------------PAASPYGTYSGQYGAYVHESQLFPMR 451
                 |...||....|:                 |.|..:|.......||...|.:..:|
Mouse   266 PGQGLPASYTPPPPFLNSAPLGPGLQQLGPPPAYPCAPAFGDKFSLEEAYPRNSSIAALR 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 36/47 (77%)
RaxNP_038861.2 Octapeptide motif 33..40 0/6 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..140 27/114 (24%)
Homeodomain 137..193 CDD:459649 41/55 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..295 17/86 (20%)
OAR 316..331 CDD:461067 2/10 (20%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 319..332 2/7 (29%)
Nuclear localization signal. /evidence=ECO:0000255 325..329 1/1 (100%)

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