Protein Alignment repo and unc-42

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001263845.1
• Gene: unc-42 / 192081
• WormBaseID: WBGene00006778
• Length: 279
• Species: Caenorhabditis elegans
• Alignment Length: 316
• Identity: 90/316 - (28%)
• Similarity: 125/316 - (39%)
• Gaps: 82/316 - (25%)

  Fly   203 SDGLLQDSSPVMINGGSAGGKLKKPDEMC---------------SQLEAGGAGVTP---PSSSST 249
            ||.||        ||.:....:.:..|..               |.|:...|.:.|   |||...
 Worm     2 SDNLL--------NGANGASTVSQFQEKVKDLGVSLHDFTAYYPSSLDTVSASLRPISDPSSDGA 58

  Fly   250 VVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAA---PAAKKDGSSSKKKGDPNGIKKKKTRTTF 311
            .....|.|.|    .|..|..|.|...|...:.:   |.:::..|            :::.||||
 Worm    59 FKKIKTEGLG----GSVFGSSIAGVTNTPARLCSLERPESERLNS------------RRRHRTTF 107

  Fly   312 TAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTP 376
            |..||:||:.||:::.|||::.|||||....|:|:|:||||||||||.||||....    |...|
 Worm   108 TQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLN----KAINP 168

  Fly   377 PTATLNPGTLAPPFTSYPQTTTVTP---PGSMDS----WTSYQTPYELTPQFSLLSPAASPYGTY 434
            |.:          |.|.|..|.:..   |.:::.    :.|||.|        :..|.|||  :|
 Worm   169 PHS----------FLSNPANTLMRQGMYPAALNRDGFWYQSYQRP--------MPYPTASP--SY 213

  Fly   435 SGQY----GAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQT 486
            |..:    ..:.|....|......|.....:.|  ||...|.....|:||....||
 Worm   214 SNSFTNPIANFGHSITSFQADDEFYQKSLALRM--TTTPSAATAATSLANINYQQT 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	27/47 (57%)
unc-42	NP_001263845.1	Homeodomain	101..157	CDD:459649	32/55 (58%)