DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and ceh-54

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001338798.1 Gene:ceh-54 / 188474 WormBaseID:WBGene00020485 Length:221 Species:Caenorhabditis elegans


Alignment Length:161 Identity:51/161 - (31%)
Similarity:80/161 - (49%) Gaps:4/161 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 KKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAK 358
            |:..:.|..:||:.|.||.|.|::|:|:.|....|||..:||:||.|:.|.|.|||:||||||||
 Worm    35 KRSNNFNPDRKKRNRITFDANQIDEMEKVFAENQYPDTMSREKLANKIQLHEERVQIWFQNRRAK 99

  Fly   359 WRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSL 423
            :|:.:  ::||:  ...||:.|.||.............|:.:.||..:.........|:.|:...
 Worm   100 YRREQ--KQTGH--PYEPPSITKNPTGEKEKTQDCTTLTSASSPGPSNLSNDTLVSIEMAPKIGT 160

  Fly   424 LSPAASPYGTYSGQYGAYVHESQLFPMRHYE 454
            .|....|....|......::.::.....:||
 Worm   161 KSVNLFPDQALSNTLNMIINANKNASENNYE 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 26/46 (57%)
ceh-54NP_001338798.1 Homeobox 49..102 CDD:365835 29/52 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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