DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and Sebox

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_032785.1 Gene:Sebox / 18292 MGIID:108012 Length:190 Species:Mus musculus


Alignment Length:192 Identity:66/192 - (34%)
Similarity:89/192 - (46%) Gaps:48/192 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 VAAPAAKKDGSSSKKKGDPNGI-KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLS 344
            :|:|.....|.:|       |: ..::.||||:..||.||||.|...||||:..||.||...:|.
Mouse     1 MASPVEASPGCAS-------GLGPHRRKRTTFSVGQLVELERVFAARPYPDISTREHLAQVTHLP 58

  Fly   345 ESRVQVWFQNRRAKWRKHEPPRKTGYIKT---------STPPTATL--NPGTLAPPF--TSYPQT 396
            |:::||||||||||..|   .||.|.:.:         |.|.|..|  :|||.:.|.  ||..|.
Mouse    59 EAKIQVWFQNRRAKRIK---DRKPGALNSRLELPPNSCSLPDTPQLPWDPGTSSHPLHPTSSAQY 120

  Fly   397 TTVTPP---------GSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFP 449
            |:..||         |...||:.              :..|:|:|| ||..|.:....|:.|
Mouse   121 TSACPPQTSCLGPILGPGQSWSG--------------AKVAAPWGT-SGASGIHSSLEQIVP 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 27/47 (57%)
SeboxNP_032785.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 5/25 (20%)
Homeodomain 19..72 CDD:459649 29/52 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..123 15/46 (33%)

Return to query results.
Submit another query.