Protein Alignment repo and vab-3

DIOPT Version :9

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001024570.1
• Gene: vab-3 / 181251
• WormBaseID: WBGene00006870
• Length: 455
• Species: Caenorhabditis elegans
• Alignment Length: 583
• Identity: 131/583 - (22%)
• Similarity: 201/583 - (34%)
• Gaps: 181/583 - (31%)

  Fly    19 LNPLG-----AKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQ-----------RLPDCNTILPN 67
            :|.||     .:|| |..|....|.|  .|:.|......:..|           |..:..||.|.
 Worm     9 VNQLGGVFVNGRPL-PDATRQRIVDL--AHKGCRPCDISRLLQVSNGCVSKILCRYYESGTIRPR 70

  Fly    68 GGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQHHHQHHQHYTAT 132
                     ..|||...|...|.|.|:..|...|       |.....:.:.:........:.|..
 Worm    71 ---------AIGGSKPRVATSDVVEKIEDYKRDQ-------PSIFAWEIRDKLLADNICNNETIP 119

  Fly   133 PPPSHNGILLHKQSSQQQQQQQQQL---VGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPH 194
            ...|.|.:|.:..:.::|...|.:|   :.|:|..|      |:||...|:
 Worm   120 SVSSINRVLRNLAAKKEQVTMQTELYDRIRIVDNFP------YNSSWYGQW-------------- 164

  Fly   195 HLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTP--PSSSSTVVNGTTNG 257
                             |:.:|                    |..|:.|  |   :.::...|.|
 Worm   165 -----------------PIPMN--------------------GAVGLNPFVP---APLIEPKTEG 189

  Fly   258 TGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKK--KTRTTFTAYQLEELE 320
            ....:....                .|...:|.::::.:     :|:|  :.||:||..|:|.||
 Worm   190 EFEKDEDQK----------------PPTEPEDDAAARMR-----LKRKLQRNRTSFTQVQIESLE 233

  Fly   321 RAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEP---PRKTGYIKTS-TPPTATL 381
            :.|||..||||||||.||.|:.|.|:|:||||.|||||||:.|.   .|.:|.:.:| :..|.|.
 Worm   234 KEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSGTMDSSLSNGTPTP 298

  Fly   382 NPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTP-YELTPQFS-----LLSPAASPY--GTYSG-Q 437
            .||::.....:.|..:..:.|....|..|...| ....||.|     |..||..||  |..:| .
 Worm   299 TPGSVTGSNMTNPIGSPASTPNRFPSNNSANLPTTNFVPQTSQMYAGLSQPAMDPYSFGIANGFS 363

  Fly   438 YGAYVHESQLFPMRHYEYGSP-----TRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQL 497
            ...|...:...|...::..||     .||...       |:|.:...:..:....::.|     |
 Worm   364 MAPYPQVTDFQPHHMFQGRSPYDFPYPRMPTN-------GHGFQQSMSPATTAVGDIPT-----L 416

  Fly   498 ADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGASCHLVEAQGQHY 560
            :.|..:.|.|              .|::.:....|.|.|:              |.:...:||
 Worm   417 SSGMSLPVSA--------------VLNSIDPSLTHSQMHE--------------LSDLTQEHY 451

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeobox	313..360	CDD:278475	30/46 (65%)
vab-3	NP_001024570.1	PAX	5..129	CDD:128645	29/138 (21%)
		COG5576	183..293	CDD:227863	46/130 (35%)
		Homeobox	221..274	CDD:395001	35/52 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R6207
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.940