Protein Alignment repo and Crx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001106801.1
• Gene: Crx / 12951
• MGIID: 1194883
• Length: 323
• Species: Mus musculus
• Alignment Length: 252
• Identity: 77/252 - (30%)
• Similarity: 99/252 - (39%)
• Gaps: 111/252 - (44%)

  Fly   303 KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWR------- 360
            |:::.|||||..||||||..|.:..||||:||||:|:|:||.||||||||:|||||.|
Mouse    62 KQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQK 126

  Fly   361 -KHEPP----------RKTGYIKTSTPPT-----------------------------ATLN--- 382
             :.:||          ||.|   ||..|:                             ||::
Mouse   127 QQQQPPGAQTKARPAKRKAG---TSPRPSTDVCTDPLGISDSYSPSLPGPSGSPTTAVATVSIWS 188

  Fly   383 ------------PGTLA--PPFTSYPQTTTVTP-------PGSMDSWTSYQT---PY--ELTPQF 421
                        .|.:|  |..||.|...|..|       |.:..|.:||.:   ||  .:.||.
Mouse   189 PASEAPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYASPSSYFSGLDPYLSPMVPQL 253

  Fly   422 S--LLSPAASP-----------------YGTYSGQYGAYVHESQLFPMRHYEYGSPT 459
            .  .|||.:.|                 |.|||             |:...|:..||
Mouse   254 GGPALSPLSGPSVGPSLAQSPTSLSGQSYSTYS-------------PVDSLEFKDPT 297

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	33/55 (60%)
Crx	NP_001106801.1	Homeodomain	64..117	CDD:459649	35/52 (67%)
		TF_Otx	188..273	CDD:427350	20/84 (24%)