DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and LOC1280391

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_061515983.1 Gene:LOC1280391 / 1280391 VectorBaseID:AGAMI1_008655 Length:414 Species:Anopheles gambiae


Alignment Length:405 Identity:103/405 - (25%)
Similarity:165/405 - (40%) Gaps:106/405 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 CSQLEAGGAGVTPPSSS---STVVNGTTNGTGNA------NSSSSAGVGIQGAAGTAGGVAAP-- 284
            |||:.......|..::|   |....||..|.||.      :::::||.|.|  ....||....  
Mosquito    40 CSQMSQAAYRYTAAAASMARSYNPVGTGVGPGNVTMSALHHAAAAAGPGSQ--CSVMGGRTHQDV 102

  Fly   285 --AAKKDGSSSKKKGDPNGI------------KKKKTRTTFTAYQLEELERAFERAPYPDVFARE 335
              |:....|.:.:.|.|..:            |:::.|||||:.||:||||||:...|||::.||
Mosquito   103 HRASMFQTSMNLQSGLPYKVYAGHDSVLAEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTRE 167

  Fly   336 ELAIKLNLSESRVQVWFQNRRAKWRKHE---------PPRKTGYIKTSTPPTATLN--------- 382
            |:|:|::|:|:||||||||||||:||.|         ....:|...:|.....:.|         
Mosquito   168 EIAMKIDLTEARVQVWFQNRRAKFRKQERIAQQKVSSNNSSSGSSNSSNSSNGSTNNAGANQDSS 232

  Fly   383 ----------------PGTLAPPFTSYPQTTTV-TPPGSMDSWTSYQTPYELTPQFSLLSPAASP 430
                            |..:.||.:.....||: |.|.|  |.:|:|:..::.|....|:...: 
Mosquito   233 SVKSEQKSSVNGGSTTPKDIKPPGSPCLSVTTLSTTPNS--SASSHQSNGDIKPINGKLTDDLN- 294

  Fly   431 YGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGATTGSV--------AGNGDESVANGGS---Y 484
                    ||.:|..   |..|:     ..:..|.:.||.        ..|.:.|::|..:   :
Mosquito   295 --------GASLHNG---PNHHH-----LVVSNGTSNGSTNNNNSHHHHNNNNNSISNNNNNNKW 343

  Fly   485 QTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGAS 549
            ..:.....|.|:.|:        |.......|..:...::|..:.:..|....:||      ||:
Mosquito   344 NPSCNPLLQNQKAAN--------HLSMNHNLQNHHHHAVAALSSPFSSLLGAAAGG------GAA 394

  Fly   550 CHLVEAQGQHYVTTA 564
            .:|::..|....|||
Mosquito   395 GYLLDPLGGLNKTTA 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 30/47 (64%)
LOC1280391XP_061515983.1 None

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