DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and Arx

DIOPT Version :9

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001292869.1 Gene:Arx / 11878 MGIID:1097716 Length:564 Species:Mus musculus


Alignment Length:626 Identity:153/626 - (24%)
Similarity:212/626 - (33%) Gaps:217/626 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DPIFGEFGGGPLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQRLPDCNTI-------L 65
            |.|.|......:..|||...:|.             .|.|:..|::..|..|..::.       |
Mouse    30 DSILGRRSPCKMRLLGAAQSLPA-------------PLASRADQEKAMQGSPKSSSAPFEAELHL 81

  Fly    66 P------NGGGGG-------------------AGSGGAGGSPNYV-----------TKLDFVNKM 94
            |      .|.|||                   |.:.|..|....|           .:.|....:
Mouse    82 PPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAATATGTAGPRGEVPPPPPPAARPGERQDSAGAV 146

  Fly    95 GCYSPSQKYEYI---SAPQKLVEQQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQ 156
            ...:.:..::.:   .|||..:.:.:.    ::.:......|||:                    
Mouse   147 AAAAAAAAWDTLKISQAPQVSISRSKS----YRENGAPFVPPPPA-------------------- 187

  Fly   157 LVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAG 221
                         ||..|.|             ||..|..:.|...|.   ..|:|..  ||..|
Mouse   188 -------------LDELSGP-------------GGVAHPEERLSAASG---PGSAPAA--GGGTG 221

  Fly   222 GK-------------------LKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSA 267
            .:                   |:..||...:.:| .|.:..|...|....||.         ::|
Mouse   222 AEDDEEELLEDEEDEEEEEELLEDDDEELLEDDA-RALLKEPRRCSVATTGTV---------AAA 276

  Fly   268 GVGIQGAAGTAGGVAAP----------AAKKDGSS----SKKKGDPNGIKKKKT---RTTFTAYQ 315
            ......|..|.||..:|          |..|||..    |.......|:.|:|.   |||||:||
Mouse   277 AAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQ 341

  Fly   316 LEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTAT 380
            ||||||||::..|||||.|||||::|:|:|:|||||||||||||||.|   |.|   ..|.|...
Mouse   342 LEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE---KAG---AQTHPPGL 400

  Fly   381 LNPGTLAP--PFTSYPQTTTVTP--PGSMDSWT-----------SYQTPYELTPQFSLLSPAASP 430
            ..||.|:.  |.:.|...:...|  |....:||           |...|    |..:.|.|:.:|
Mouse   401 PFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPP----PGSASLPPSGAP 461

  Fly   431 YGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGAT-----------------TGSVAGNGDESV 478
            .| .|...||.|       .||..:.||....:.:|                 |.:|.|    :|
Mouse   462 LG-LSTFLGAAV-------FRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEG----AV 514

  Fly   479 ANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLN 519
            |:|.   .|:..||...:.|..........::...|..|||
Mouse   515 ASGA---LADPATAAADRRASSIAALRLKAKEHAAQLTQLN 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeobox 313..360 CDD:278475 35/46 (76%)
ArxNP_001292869.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 54..79 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..264 31/208 (15%)
Homeobox 334..386 CDD:278475 40/51 (78%)
OAR 528..545 CDD:281777 1/16 (6%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 532..545 0/12 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24329
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.970

Return to query results.
Submit another query.